Package: mgsa

Version: 1.7.1

Command: rm -rf mgsa.buildbin-libdir && mkdir mgsa.buildbin-libdir && /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL --build --no-multiarch --library=mgsa.buildbin-libdir mgsa_1.7.1.tar.gz

StartedAt: 2013-03-24 11:54:11 -0700 (Sun, 24 Mar 2013)

EndedAt: 2013-03-24 11:54:19 -0700 (Sun, 24 Mar 2013)

EllapsedTime: 7.3 seconds

RetCode: 0

Status:  OK

PackageFile: mgsa_1.7.1.tgz

PackageFileSize: 427.7 KiB

* installing *source* package 'mgsa' ...
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for OpenMP flag of C compiler... -fopenmp
configure: creating ./config.status
config.status: creating src/Makevars
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -g -O2 -fopenmp -DPACKAGE_NAME=\"mgsa\" -DPACKAGE_TARNAME=\"mgsa\" -DPACKAGE_VERSION=\"0.99.0\" -DPACKAGE_STRING=\"mgsa\ 0.99.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_OPENMP=1 -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c mgsa.c -o mgsa.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o mgsa.so mgsa.o -fopenmp -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/mgsa.buildbin-libdir/mgsa/libs
** R
** data
** inst
** preparing package for lazy loading
'.path.package' is deprecated.
Use 'path.package' instead.
See help("Deprecated")
Creating a generic function for 'plot' from package 'graphics' in package 'mgsa'
** help
*** installing help indices
** building package indices
** installing vignettes
   'mgsa.Rnw' 
** testing if installed package can be loaded
'.path.package' is deprecated.
Use 'path.package' instead.
See help("Deprecated")
packaged installation of 'mgsa' as 'mgsa_1.7.1.tgz'
* DONE (mgsa)