Package: flowQB

Version: 1.1.1

Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings flowQB_1.1.1.tar.gz

StartedAt: 2013-03-25 01:37:15 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 01:40:13 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 178.2 seconds

RetCode: 0

Status:  OK

CheckDir: flowQB.Rcheck

Warnings: 0

* using log directory ‘/home/biocbuild/bbs-2.12-bioc/meat/flowQB.Rcheck’
* using R version 3.0.0 beta (2013-03-19 r62328)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘flowQB/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘flowQB’ version ‘1.1.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘flowQB’ can be installed ... [9s/10s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [83s/85s] OK
Examples with CPU or elapsed time > 5s
                          user system elapsed
DiscriminantExamination 13.897  0.120  14.384
KmeansMeanSD            13.056  0.024  13.191
qrMESF                  12.329  0.144  13.514
MFI2MESF                12.297  0.048  12.719
lrMESF                  12.233  0.036  12.332
flowQB-package          12.149  0.028  12.244
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘flowQB’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘flowQB_Sweave_.Rnw’ using ‘UTF-8’ 
** testing if installed package can be loaded
* DONE (flowQB)

name	user	system	elapsed
DiscriminantExamination	13.897	0.120	14.384
KmeansMeanSD	13.056	0.024	13.191
KmeansMedianrSD	0.012	0.000	0.014
MFI2MESF	12.297	0.048	12.719
ReadDD	1.012	0.028	1.040
flowQB-package	12.149	0.028	12.244
lrMESF	12.233	0.036	12.332
qrMESF	12.329	0.144	13.514