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Package 225/658HostnameOS / ArchBUILDCHECKBUILD BIN
flowPlots 1.7.0
N. Hawkins
Snapshot Date: 2013-03-23 17:02:20 -0700 (Sat, 23 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/flowPlots
Last Changed Rev: 70052 / Revision: 74756
Last Changed Date: 2012-10-01 15:43:56 -0700 (Mon, 01 Oct 2012)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
pelham Mac OS X Snow Leopard (10.6.8) / x86_64  OK [ OK ] OK 

Summary

Package: flowPlots
Version: 1.7.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch flowPlots_1.7.0.tar.gz
StartedAt: 2013-03-24 05:05:31 -0700 (Sun, 24 Mar 2013)
EndedAt: 2013-03-24 05:06:41 -0700 (Sun, 24 Mar 2013)
EllapsedTime: 69.8 seconds
RetCode: 0
Status:  OK 
CheckDir: flowPlots.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/flowPlots.Rcheck'
* using R version 3.0.0 beta (2013-03-21 r62346)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'flowPlots/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowPlots' version '1.7.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'flowPlots' can be installed ... [3s/3s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [34s/35s] OK
Examples with CPU or elapsed time > 5s
                    user system elapsed
StackedData-class 15.356  0.233  15.974
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

flowPlots.Rcheck/00install.out:

* installing *source* package 'flowPlots' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'flowPlots.Rnw' 
** testing if installed package can be loaded
* DONE (flowPlots)

flowPlots.Rcheck/flowPlots-Ex.timings:

nameusersystemelapsed
GroupListBoxplot0.2550.0160.273
StackedData-class15.356 0.23315.974
adultsNeonates0.0070.0010.008
computeMarginalData-methods3.7760.0524.008
computeMarkers-methods0.0150.0020.017
computePFDData-methods3.3610.0573.444
computePFDGroupStatsList0.4340.0220.463
computePFDPartsData-methods4.3850.0594.486
computeProfileData-methods4.1140.0624.252
legendPFDStatsGroupNames0.2030.0100.215
makeBarplotData0.1040.0060.111
makeDataList0.0740.0060.080
makeTernaryData0.2020.0120.216
marginalDF0.0100.0010.011
marginalData-methods0.0160.0050.022
markerMatrix0.0090.0030.011
markers-methods0.0160.0030.020
pfdDF0.0100.0010.011
pfdData-methods0.0210.0030.023
pfdPartsData-methods0.0160.0060.021
pfdPartsList0.0100.0020.012
profileDF0.0150.0010.017
profileData-methods0.0150.0010.016
readStackedData-methods0.1360.0050.140
stackedData-methods0.1790.0110.190