dexus 0.99.2
Guenter Klambauer
| Snapshot Date: 2013-03-24 17:01:43 -0700 (Sun, 24 Mar 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/dexus | | Last Changed Rev: 74600 / Revision: 74774 | | Last Changed Date: 2013-03-20 04:39:26 -0700 (Wed, 20 Mar 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Leopard (10.5.8) / i386 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=dexus.buildbin-libdir dexus_0.99.2.tar.gz'
>>>>>>>
* installing *source* package 'dexus' ...
** libs
*** arch - i386
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c dexus.cpp -o dexus.o
dexus.cpp: In function 'SEXPREC* dexus_impl(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, int*, SEXPREC*, SEXPREC*, SEXPREC*)':
dexus.cpp:193: warning: unused variable 'DEFAULT_R'
g++ -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o dexus.so dexus.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/dexus.buildbin-libdir/dexus/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'plot' from package 'graphics' in package 'dexus'
** help
*** installing help indices
** building package indices
** installing vignettes
'dexus.Rnw'
** testing if installed package can be loaded
* DONE (dexus)
>>>>>>>
>>>>>>> FIXING LINKS FOR dexus.buildbin-libdir/dexus/libs/i386/dexus.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "dexus.buildbin-libdir/dexus/libs/i386/dexus.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "dexus.buildbin-libdir/dexus/libs/i386/dexus.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "dexus.buildbin-libdir/dexus/libs/i386/dexus.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "dexus.buildbin-libdir/dexus/libs/i386/dexus.so"
>>>>>>>
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=dexus.buildbin-libdir --libs-only dexus_0.99.2.tar.gz'
>>>>>>>
* installing *source* package 'dexus' ...
** libs
*** arch - x86_64
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c dexus.cpp -o dexus.o
dexus.cpp: In function 'SEXPREC* dexus_impl(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, int*, SEXPREC*, SEXPREC*, SEXPREC*)':
dexus.cpp:193: warning: unused variable 'DEFAULT_R'
g++ -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o dexus.so dexus.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/dexus.buildbin-libdir/dexus/libs/x86_64
* DONE (dexus)
>>>>>>>
>>>>>>> FIXING LINKS FOR dexus.buildbin-libdir/dexus/libs/x86_64/dexus.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "dexus.buildbin-libdir/dexus/libs/x86_64/dexus.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "dexus.buildbin-libdir/dexus/libs/x86_64/dexus.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "dexus.buildbin-libdir/dexus/libs/x86_64/dexus.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "dexus.buildbin-libdir/dexus/libs/x86_64/dexus.so"