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Package 157/658HostnameOS / ArchBUILDCHECKBUILD BIN
ctc 1.33.0
Antoine Lucas
Snapshot Date: 2013-03-24 17:01:43 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ctc
Last Changed Rev: 74233 / Revision: 74774
Last Changed Date: 2013-03-12 10:16:02 -0700 (Tue, 12 Mar 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK [ OK ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: ctc
Version: 1.33.0
Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings ctc_1.33.0.tar.gz
StartedAt: 2013-03-25 01:01:34 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 01:02:28 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 53.6 seconds
RetCode: 0
Status:  OK 
CheckDir: ctc.Rcheck
Warnings: 0

Command output

* using log directory ‘/home/biocbuild/bbs-2.12-bioc/meat/ctc.Rcheck’
* using R version 3.0.0 beta (2013-03-19 r62328)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ctc/DESCRIPTION’ ... OK
* this is package ‘ctc’ version ‘1.33.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ctc’ can be installed ... [4s/4s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.First.lib: warning in .packages(all = TRUE): partial argument match of
  'all' to 'all.available'
.onLoad: warning in .packages(all = TRUE): partial argument match of
  'all' to 'all.available'
hclust2treeview: warning in .packages(all = TRUE): partial argument
  match of 'all' to 'all.available'
r2atr: warning in write.table(data, file = file, row.name = FALSE,
  col.names = FALSE, quote = FALSE, sep = "\t"): partial argument match
  of 'row.name' to 'row.names'
r2gtr: warning in write.table(data, file = file, row.name = FALSE,
  col.names = FALSE, quote = FALSE, sep = "\t", dec = dec): partial
  argument match of 'row.name' to 'row.names'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [2s/2s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/home/biocbuild/bbs-2.12-bioc/meat/ctc.Rcheck/00check.log’
for details.

ctc.Rcheck/00install.out:

* installing *source* package ‘ctc’ ...
** R
** demo
** exec
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘ctc.Rnw’ 
** testing if installed package can be loaded
Warning: ignoring .First.lib() for package ‘ctc’
* DONE (ctc)

ctc.Rcheck/ctc-Ex.timings:

nameusersystemelapsed
hc2Newick0.0440.0040.049
hclust2treeview0.0720.0000.076
r2cluster0.0240.0000.028
r2gtr0.0520.0000.052
r2xcluster0.0360.0000.038
xcluster0.020.000.02
xcluster2r0.0320.0000.033