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Package 121/658HostnameOS / ArchBUILDCHECKBUILD BIN
chroGPS 1.1.0
Oscar Reina
Snapshot Date: 2013-03-24 17:01:43 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/chroGPS
Last Changed Rev: 70052 / Revision: 74774
Last Changed Date: 2012-10-01 15:43:56 -0700 (Mon, 01 Oct 2012)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  WARNINGS 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ WARNINGS ] OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 

Summary

Package: chroGPS
Version: 1.1.0
Command: rm -rf chroGPS.buildbin-libdir && mkdir chroGPS.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=chroGPS.buildbin-libdir chroGPS_1.1.0.tar.gz >chroGPS-install.out 2>&1 && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD check --library=chroGPS.buildbin-libdir --install="check:chroGPS-install.out" --force-multiarch --no-vignettes --timings chroGPS_1.1.0.tar.gz && mv chroGPS.buildbin-libdir/* chroGPS.Rcheck/ && rmdir chroGPS.buildbin-libdir
StartedAt: 2013-03-25 01:39:19 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 01:41:40 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 141.6 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: chroGPS.Rcheck
Warnings: 2

Command output

* using log directory 'E:/biocbld/bbs-2.12-bioc/meat/chroGPS.Rcheck'
* using R version 3.0.0 beta (2013-03-19 r62328)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'chroGPS/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'chroGPS' version '1.1.0'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package which this enhances but not available for checking: 'multicore'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'chroGPS' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  9.6Mb
  sub-directories of 1Mb or more:
    data   9.3Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
contour2dDP: no visible binding for global variable 'state'
contour3dDP: no visible global function definition for 'ssden'
contour3dDP: no visible global function definition for 'dssden'
contour3dDP: no visible global function definition for 'convhulln'
contour3dDP: no visible binding for global variable 'type'
domainDist: no visible global function definition for 'combs'
enrichmentClusGPS: no visible global function definition for 'barplot2'
uniqueCount: no visible binding for global variable 'u'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... [10s] WARNING
Found the following significant warnings:

  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
** running examples for arch 'x64' ... [12s] WARNING
Found the following significant warnings:

  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
  Warning: %in% between a RangedData and a RangedData object is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There were 2 warnings.
NOTE: There were 3 notes.
See
  'E:/biocbld/bbs-2.12-bioc/meat/chroGPS.Rcheck/00check.log'
for details.

chroGPS.Rcheck/00install.out:


install for i386

* installing *source* package 'chroGPS' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'plot' from package 'graphics' in package 'chroGPS'
** help
*** installing help indices
** building package indices
** installing vignettes
   'chroGPS.Rnw' 
** testing if installed package can be loaded

install for x64

* installing *source* package 'chroGPS' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'chroGPS' as chroGPS_1.1.0.zip
* DONE (chroGPS)