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Package 101/658HostnameOS / ArchBUILDCHECKBUILD BIN
categoryCompare 1.3.0
Robert M. Flight
Snapshot Date: 2013-03-24 17:01:43 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/categoryCompare
Last Changed Rev: 70052 / Revision: 74774
Last Changed Date: 2012-10-01 15:43:56 -0700 (Mon, 01 Oct 2012)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: categoryCompare
Version: 1.3.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch categoryCompare_1.3.0.tar.gz
StartedAt: 2013-03-25 01:35:55 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 01:40:22 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 267.5 seconds
RetCode: 0
Status:  OK 
CheckDir: categoryCompare.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/categoryCompare.Rcheck'
* using R Under development (unstable) (2013-02-26 r62077)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'categoryCompare/DESCRIPTION' ... OK
* this is package 'categoryCompare' version '1.3.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'categoryCompare' can be installed ... [22s/24s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [42s/42s] OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
minCount             6.020  0.122   6.150
ccEnrichResult-class 5.339  0.169   5.523
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

categoryCompare.Rcheck/00install.out:

* installing *source* package 'categoryCompare' ...
** R
** data
** inst
** preparing package for lazy loading
Warning in .simpleDuplicateClass(def, prev) :
  the specification for S3 class "AsIs" in package 'XMLRPC' seems equivalent to one from package 'BiocGenerics' and is not turning on duplicate class definitions for this class
** help
*** installing help indices
** building package indices
** installing vignettes
   'categoryCompare_vignette.Rnw' 
** testing if installed package can be loaded
Warning in .simpleDuplicateClass(def, prev) :
  the specification for S3 class "AsIs" in package 'XMLRPC' seems equivalent to one from package 'BiocGenerics' and is not turning on duplicate class definitions for this class
* DONE (categoryCompare)

categoryCompare.Rcheck/categoryCompare-Ex.timings:

nameusersystemelapsed
GENccEnrichResult-class1.3170.0411.358
HyperGParamsCC-class0.0120.0060.019
HyperGResultCC-class0.0120.0090.021
breakEdges-methods1.2630.0431.308
breakEdges0.0090.0060.016
ccCompare1.9310.0551.987
ccCompareCollection-class0.0030.0040.080
ccCompareResult-class0.0030.0050.008
ccData0.9430.0270.973
ccEnrich0.9890.0401.031
ccEnrichCollection-class2.4090.0862.503
ccEnrichResult-class5.3390.1695.523
ccGeneList-class1.1520.0391.194
ccOptions-class0.0470.0210.069
ccOutCyt-methods0.0120.0100.022
ccSigList-class0.0110.0070.018
cytOutData-methods0.0150.0140.034
cytOutNodes-methods0.0130.0120.026
hyperGTestCC1.3650.0711.439
mergeLists-methods1.7350.0701.811
mergedData-class1.3230.0451.373
minCount6.0200.1226.150
minNodes0.0650.0120.077
pvalueType4.8050.1534.975
show-methods0.0230.0080.031