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Package 78/658HostnameOS / ArchBUILDCHECKBUILD BIN
biomvRCNS 0.99.3
Yang Du
Snapshot Date: 2013-03-24 17:01:43 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/biomvRCNS
Last Changed Rev: 74641 / Revision: 74774
Last Changed Date: 2013-03-21 02:38:41 -0700 (Thu, 21 Mar 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK [ OK ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: biomvRCNS
Version: 0.99.3
Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings biomvRCNS_0.99.3.tar.gz
StartedAt: 2013-03-25 00:20:46 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 00:28:09 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 442.3 seconds
RetCode: 0
Status:  OK 
CheckDir: biomvRCNS.Rcheck
Warnings: 0

Command output

* using log directory ‘/home/biocbuild/bbs-2.12-bioc/meat/biomvRCNS.Rcheck’
* using R version 3.0.0 beta (2013-03-19 r62328)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biomvRCNS/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘biomvRCNS’ version ‘0.99.3’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biomvRCNS’ can be installed ... [42s/43s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [47s/48s] OK
Examples with CPU or elapsed time > 5s
             user system elapsed
biomvRhsmm 16.641  0.100  17.180
biomvRseg   6.636  0.008   6.826
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

biomvRCNS.Rcheck/00install.out:

* installing *source* package ‘biomvRCNS’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.12-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c biomvRCNS.c -o biomvRCNS.o
gcc -std=gnu99 -shared -L/usr/local/lib -o biomvRCNS.so biomvRCNS.o -L/home/biocbuild/bbs-2.12-bioc/R/lib -lR
installing to /home/biocbuild/bbs-2.12-bioc/meat/biomvRCNS.Rcheck/biomvRCNS/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for ‘plot’ from package ‘graphics’ in package ‘biomvRCNS’
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘biomvRCNS.Rnw’ using ‘UTF-8’ 
** testing if installed package can be loaded
* DONE (biomvRCNS)

biomvRCNS.Rcheck/biomvRCNS-Ex.timings:

nameusersystemelapsed
biomvRCNS-class0.7240.0040.734
biomvRGviz2.1360.0202.159
biomvRhsmm16.641 0.10017.180
biomvRmgmr0.8760.0000.878
biomvRseg6.6360.0086.826
hsmmRun0.2200.0040.232
maxGapminRun0.0280.0040.030
regionSegAlphaNB0.4480.0080.466
regionSegCost0.0200.0040.026
simmvRsegData0.0200.0000.023
sojournAnno0.1320.0000.154
splitFarNeighbour0.0400.0000.043