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Package 76/658HostnameOS / ArchBUILDCHECKBUILD BIN
biomaRt 2.15.1
Steffen Durinck
Snapshot Date: 2013-03-24 17:01:43 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/biomaRt
Last Changed Rev: 73982 / Revision: 74774
Last Changed Date: 2013-03-06 13:58:20 -0800 (Wed, 06 Mar 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK [ OK ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: biomaRt
Version: 2.15.1
Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings biomaRt_2.15.1.tar.gz
StartedAt: 2013-03-25 00:20:24 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 00:21:24 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 60.1 seconds
RetCode: 0
Status:  OK 
CheckDir: biomaRt.Rcheck
Warnings: 0

Command output

* using log directory ‘/home/biocbuild/bbs-2.12-bioc/meat/biomaRt.Rcheck’
* using R version 3.0.0 beta (2013-03-19 r62328)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biomaRt/DESCRIPTION’ ... OK
* this is package ‘biomaRt’ version ‘2.15.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biomaRt’ can be installed ... [4s/4s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [3s/3s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

biomaRt.Rcheck/00install.out:

* installing *source* package ‘biomaRt’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘biomaRt.Rnw’ 
** testing if installed package can be loaded
* DONE (biomaRt)

biomaRt.Rcheck/biomaRt-Ex.timings:

nameusersystemelapsed
NP2009code0.0080.0040.012
attributePages0.0080.0080.018
exportFASTA0.0160.0040.018
filterOptions0.0120.0040.019
filterType0.0080.0080.018
getBM0.0160.0040.020
getBMlist0.0120.0040.019
getGene0.0200.0120.032
getLDS0.0120.0080.020
getSequence0.0200.0040.023
getXML0.0120.0080.021
listAttributes0.0160.0040.020
listDatasets0.0160.0120.027
listFilters0.0160.0040.018
listMarts0.0120.0040.015
useDataset0.0120.0040.017
useMart0.0120.0080.021