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Package 75/658HostnameOS / ArchBUILDCHECKBUILD BIN
bioDist 1.31.1
Bioconductor Package Maintainer
Snapshot Date: 2013-03-24 17:01:43 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/bioDist
Last Changed Rev: 74707 / Revision: 74774
Last Changed Date: 2013-03-22 15:17:14 -0700 (Fri, 22 Mar 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK [ WARNINGS ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 

Summary

Package: bioDist
Version: 1.31.1
Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings bioDist_1.31.1.tar.gz
StartedAt: 2013-03-25 00:20:11 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 00:21:06 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 54.8 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: bioDist.Rcheck
Warnings: 1

Command output

* using log directory ‘/home/biocbuild/bbs-2.12-bioc/meat/bioDist.Rcheck’
* using R version 3.0.0 beta (2013-03-19 r62328)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘bioDist/DESCRIPTION’ ... OK
* this is package ‘bioDist’ version ‘1.31.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘bioDist’ can be installed ... [4s/5s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Codoc mismatches from documentation object 'tau.dist':
tau.dist
  Code: function(x, ...)
  Docs: function(x)
  Argument names in code not in docs:
    ...

* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [6s/6s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
See
  ‘/home/biocbuild/bbs-2.12-bioc/meat/bioDist.Rcheck/00check.log’
for details.

bioDist.Rcheck/00install.out:

* installing *source* package ‘bioDist’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘bioDist.Rnw’ 
** testing if installed package can be loaded
* DONE (bioDist)

bioDist.Rcheck/bioDist-Ex.timings:

nameusersystemelapsed
KLD.matrix0.3280.0080.342
KLdist.matrix0.0520.0000.052
closest.top3.7480.0283.795
cor.dist0.0240.0000.023
euc0.0120.0000.014
man0.0160.0040.018
mutualInfo0.0280.0000.028
spearman.dist0.0160.0000.017
tau.dist0.0160.0000.016