Package: a4

Version: 1.7.1

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch a4_1.7.1.tar.gz

StartedAt: 2013-03-25 00:55:56 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 00:59:08 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 192.1 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: a4.Rcheck

Warnings: 1

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/a4.Rcheck'
* using R Under development (unstable) (2013-02-26 r62077)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'a4/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'a4' version '1.7.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'a4' can be installed ... [31s/31s] WARNING
Found the following significant warnings:
  Warning: '.path.package' is deprecated.
  Warning: '.path.package' is deprecated.
See '/Users/biocbuild/bbs-2.12-bioc/meat/a4.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
See
  '/Users/biocbuild/bbs-2.12-bioc/meat/a4.Rcheck/00check.log'
for details.

* installing *source* package 'a4' ...
** R
** inst
** preparing package for lazy loading
Warning: '.path.package' is deprecated.
Use 'path.package' instead.
See help("Deprecated")
** help
No man pages found in package  'a4' 
*** installing help indices
** building package indices
** installing vignettes
   'a4vignette.Rnw' 
** testing if installed package can be loaded
Warning: '.path.package' is deprecated.
Use 'path.package' instead.
See help("Deprecated")
* DONE (a4)