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Package 561/658HostnameOS / ArchBUILDCHECKBUILD BIN
Rsubread 1.9.3
Wei Shi
Snapshot Date: 2013-03-23 17:02:20 -0700 (Sat, 23 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rsubread
Last Changed Rev: 74594 / Revision: 74756
Last Changed Date: 2013-03-19 20:53:18 -0700 (Tue, 19 Mar 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 N O T   S U P P O R T E D
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
pelham Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK [ OK ]

Summary

Package: Rsubread
Version: 1.9.3
Command: rm -rf Rsubread.buildbin-libdir && mkdir Rsubread.buildbin-libdir && /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL --build --no-multiarch --library=Rsubread.buildbin-libdir Rsubread_1.9.3.tar.gz
StartedAt: 2013-03-24 12:09:08 -0700 (Sun, 24 Mar 2013)
EndedAt: 2013-03-24 12:10:02 -0700 (Sun, 24 Mar 2013)
EllapsedTime: 53.5 seconds
RetCode: 0
Status:  OK 
PackageFile: Rsubread_1.9.3.tgz
PackageFileSize: 22.46 MiB

Command output

* installing *source* package 'Rsubread' ...
@@@@@ The operation system is supposed to be Darwin.
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DMAKE_FOR_EXON -D MACOS  -fPIC  -mtune=core2 -g -O2  -c R_wrapper.c -o R_wrapper.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DMAKE_FOR_EXON -D MACOS  -fPIC  -mtune=core2 -g -O2  -c SNPCalling.c -o SNPCalling.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DMAKE_FOR_EXON -D MACOS  -fPIC  -mtune=core2 -g -O2  -c aligner.c -o aligner.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DMAKE_FOR_EXON -D MACOS  -fPIC  -mtune=core2 -g -O2  -c atgcContent.c -o atgcContent.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DMAKE_FOR_EXON -D MACOS  -fPIC  -mtune=core2 -g -O2  -c detectionCall.c -o detectionCall.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DMAKE_FOR_EXON -D MACOS  -fPIC  -mtune=core2 -g -O2  -c detectionCallAnnotation.c -o detectionCallAnnotation.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DMAKE_FOR_EXON -D MACOS  -fPIC  -mtune=core2 -g -O2  -c exon-algorithms.c -o exon-algorithms.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DMAKE_FOR_EXON -D MACOS  -fPIC  -mtune=core2 -g -O2  -c exon-align.c -o exon-align.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DMAKE_FOR_EXON -D MACOS  -fPIC  -mtune=core2 -g -O2  -c fullscan.c -o fullscan.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DMAKE_FOR_EXON -D MACOS  -fPIC  -mtune=core2 -g -O2  -c gene-algorithms.c -o gene-algorithms.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DMAKE_FOR_EXON -D MACOS  -fPIC  -mtune=core2 -g -O2  -c gene-value-index.c -o gene-value-index.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DMAKE_FOR_EXON -D MACOS  -fPIC  -mtune=core2 -g -O2  -c hashtable.c -o hashtable.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DMAKE_FOR_EXON -D MACOS  -fPIC  -mtune=core2 -g -O2  -c index-builder.c -o index-builder.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DMAKE_FOR_EXON -D MACOS  -fPIC  -mtune=core2 -g -O2  -c input-files.c -o input-files.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DMAKE_FOR_EXON -D MACOS  -fPIC  -mtune=core2 -g -O2  -c processExons.c -o processExons.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DMAKE_FOR_EXON -D MACOS  -fPIC  -mtune=core2 -g -O2  -c propmapped.c -o propmapped.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DMAKE_FOR_EXON -D MACOS  -fPIC  -mtune=core2 -g -O2  -c qualityScores.c -o qualityScores.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DMAKE_FOR_EXON -D MACOS  -fPIC  -mtune=core2 -g -O2  -c readSummary.c -o readSummary.o
readSummary.c: In function 'readSummary':
readSummary.c:193: warning: format '%d' expects type 'int', but argument 5 has type 'long int'
readSummary.c:193: warning: format '%d' expects type 'int', but argument 6 has type 'long int'
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DMAKE_FOR_EXON -D MACOS  -fPIC  -mtune=core2 -g -O2  -c removeDupReads.c -o removeDupReads.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DMAKE_FOR_EXON -D MACOS  -fPIC  -mtune=core2 -g -O2  -c sam2bed.c -o sam2bed.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DMAKE_FOR_EXON -D MACOS  -fPIC  -mtune=core2 -g -O2  -c sorted-hashtable.c -o sorted-hashtable.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Rsubread.so R_wrapper.o SNPCalling.o aligner.o atgcContent.o detectionCall.o detectionCallAnnotation.o exon-algorithms.o exon-align.o fullscan.o gene-algorithms.o gene-value-index.o hashtable.o index-builder.o input-files.o processExons.o propmapped.o qualityScores.o readSummary.o removeDupReads.o sam2bed.o sorted-hashtable.o -lpthread -DMAKE_FOR_EXON -D MACOS -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/Rsubread.buildbin-libdir/Rsubread/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'Rsubread.Rnw' 
** testing if installed package can be loaded
packaged installation of 'Rsubread' as 'Rsubread_1.9.3.tgz'
* DONE (Rsubread)