PING 2.1.02
Renan Sauteraud
| Snapshot Date: 2013-03-24 17:01:43 -0700 (Sun, 24 Mar 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/PING | | Last Changed Rev: 73910 / Revision: 74774 | | Last Changed Date: 2013-03-04 17:47:06 -0800 (Mon, 04 Mar 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Leopard (10.5.8) / i386 | OK | [ OK ] | OK |
* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/PING.Rcheck'
* using R Under development (unstable) (2013-02-26 r62077)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'PING/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'PING' version '2.1.02'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'PING' can be installed ... [36s/37s] OK
* checking installed package size ... NOTE
installed size is 51.8Mb
sub-directories of 1Mb or more:
extdata 50.0Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [18s/18s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
NOTE: There was 1 note.
See
'/Users/biocbuild/bbs-2.12-bioc/meat/PING.Rcheck/00check.log'
for details.
* installing *source* package 'PING' ...
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for GSL... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c init.c -o init.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c ping.c -o ping.o
ping.c: In function 'fitModelAllk':
ping.c:145: warning: suggest parentheses around comparison in operand of &
ping.c: In function 'iterEM':
ping.c:659: warning: unused variable 'mu'
ping.c: In function 'ECM1':
ping.c:912: warning: suggest parentheses around comparison in operand of &
ping.c:1072: warning: suggest parentheses around comparison in operand of &
ping.c:760: warning: unused variable 'k'
ping.c: In function 'ECM1PE':
ping.c:1320: warning: suggest parentheses around comparison in operand of &
ping.c:1473: warning: suggest parentheses around comparison in operand of &
ping.c:1108: warning: unused variable 'k'
ping.c: In function 'ECM2':
ping.c:1536: warning: unused variable 'ee'
ping.c:1536: warning: unused variable 'ggR'
ping.c:1536: warning: unused variable 'ggF'
ping.c:1536: warning: unused variable 'aaR'
ping.c:1536: warning: unused variable 'aaF'
ping.c:1536: warning: unused variable 'etaDiff'
ping.c:1527: warning: unused variable 'k'
ping.c: In function 'ECM2PE':
ping.c:1743: warning: unused variable 'ee'
ping.c:1743: warning: unused variable 'ggR'
ping.c:1743: warning: unused variable 'ggF'
ping.c:1743: warning: unused variable 'aaR'
ping.c:1743: warning: unused variable 'aaF'
ping.c:1743: warning: unused variable 'etaDiff'
ping.c:1734: warning: unused variable 'k'
ping.c: In function 'getInfMat':
ping.c:2590: warning: unused variable 'PhiRw'
ping.c:2590: warning: unused variable 'PhiFw'
ping.c: In function 'getInfMatPE':
ping.c:3040: warning: unused variable 'PhiFRw'
ping.c: In function 'mergePeak':
ping.c:3301: warning: unused variable 'j'
ping.c:3301: warning: unused variable 'i'
ping.c: In function 'BICPE':
ping.c:2165: warning: 'penalty' may be used uninitialized in this function
ping.c: In function 'BIC':
ping.c:2058: warning: 'penalty' may be used uninitialized in this function
ping.c: In function 'fitModelK':
ping.c:477: warning: 'firstFit' may be used uninitialized in this function
ping.c:477: warning: 'ans' may be used uninitialized in this function
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o PING.so init.o ping.o -L/usr/local/lib -lgsl -lgslcblas -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/PING.Rcheck/PING/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'plot' from package 'graphics' in package 'PING'
** help
*** installing help indices
** building package indices
** installing vignettes
'PING-PE.Rnw'
'PING.Rnw'
** testing if installed package can be loaded
* DONE (PING)