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Package 415/658HostnameOS / ArchBUILDCHECKBUILD BIN
MLP 1.7.3
Tobias Verbeke
Snapshot Date: 2013-03-24 17:01:43 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MLP
Last Changed Rev: 74009 / Revision: 74774
Last Changed Date: 2013-03-07 06:56:07 -0800 (Thu, 07 Mar 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK [ OK ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 

Summary

Package: MLP
Version: 1.7.3
Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings MLP_1.7.3.tar.gz
StartedAt: 2013-03-25 03:12:51 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 03:21:53 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 541.9 seconds
RetCode: 0
Status:  OK 
CheckDir: MLP.Rcheck
Warnings: 0

Command output

* using log directory ‘/home/biocbuild/bbs-2.12-bioc/meat/MLP.Rcheck’
* using R version 3.0.0 beta (2013-03-19 r62328)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MLP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MLP’ version ‘1.7.3’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MLP’ can be installed ... [18s/18s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [177s/194s] OK
Examples with CPU or elapsed time > 5s
              user system elapsed
MLP         96.110  0.996  98.987
getGeneSets 61.204  1.580  74.863
plot.MLP     5.348  0.068   6.819
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘test.MLP.R’ [156s/159s]
 [157s/159s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

MLP.Rcheck/00install.out:

* installing *source* package ‘MLP’ ...
** R
** inst
** preparing package for lazy loading
'.path.package' is deprecated.
Use 'path.package' instead.
See help("Deprecated")
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘UsingMLP.Rnw’ 
** testing if installed package can be loaded
'.path.package' is deprecated.
Use 'path.package' instead.
See help("Deprecated")
* DONE (MLP)

MLP.Rcheck/MLP-Ex.timings:

nameusersystemelapsed
MLP96.110 0.99698.987
getGeneSets61.204 1.58074.863
mlpBarplot0.0520.0000.112
plot.MLP5.3480.0686.819
plotGOgraph1.7560.0121.768
plotGeneSetSignificance1.1280.0161.168