Package: MLInterfaces

Version: 1.39.5

Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings MLInterfaces_1.39.5.tar.gz

StartedAt: 2013-03-25 03:12:28 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 03:19:42 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 433.6 seconds

RetCode: 0

Status:  OK

CheckDir: MLInterfaces.Rcheck

Warnings: 0

* using log directory ‘/home/biocbuild/bbs-2.12-bioc/meat/MLInterfaces.Rcheck’
* using R version 3.0.0 beta (2013-03-19 r62328)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MLInterfaces/DESCRIPTION’ ... OK
* this is package ‘MLInterfaces’ version ‘1.39.5’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MLInterfaces’ can be installed ... [34s/36s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘multicore’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [77s/83s] OK
Examples with CPU or elapsed time > 5s
                           user system elapsed
MLearn-new               35.990  2.240  44.121
predict.classifierOutput  6.652  0.016   7.560
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/home/biocbuild/bbs-2.12-bioc/meat/MLInterfaces.Rcheck/00check.log’
for details.

* installing *source* package ‘MLInterfaces’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘MLInterfaces.Rnw’ 
   ‘MLint_devel.Rnw’ 
   ‘MLprac2_2.Rnw’ 
   ‘xvalComputerClusters.Rnw’ 
** testing if installed package can be loaded
* DONE (MLInterfaces)

name	user	system	elapsed
MLearn-new	35.990	2.240	44.121
RAB	0.276	0.000	0.277
balKfold.xvspec	0.060	0.000	0.065
classifierOutput-class	2.436	0.684	4.101
clusteringOutput-class	0.004	0.004	0.007
confuMat-methods	0.396	0.036	0.431
fs.absT	0.056	0.004	0.062
fsHistory	3.104	0.464	0.305
learnerSchema-class	0.020	0.004	0.026
planarPlot-methods	3.548	0.180	3.747
predict.classifierOutput	6.652	0.016	7.560
raboostCont-class	0.008	0.000	0.010
varImpStruct-class	1.164	0.064	1.228
xvalLoop	0.020	0.000	0.022
xvalSpec	0.200	0.312	0.354