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Package 388/658HostnameOS / ArchBUILDCHECKBUILD BIN
MBCB 1.13.0
Jeff Allen
Snapshot Date: 2013-03-23 17:02:20 -0700 (Sat, 23 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MBCB
Last Changed Rev: 70052 / Revision: 74756
Last Changed Date: 2012-10-01 15:43:56 -0700 (Mon, 01 Oct 2012)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
pelham Mac OS X Snow Leopard (10.6.8) / x86_64  OK [ OK ] OK 

Summary

Package: MBCB
Version: 1.13.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch MBCB_1.13.0.tar.gz
StartedAt: 2013-03-24 07:25:10 -0700 (Sun, 24 Mar 2013)
EndedAt: 2013-03-24 07:25:55 -0700 (Sun, 24 Mar 2013)
EllapsedTime: 44.6 seconds
RetCode: 0
Status:  OK 
CheckDir: MBCB.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/MBCB.Rcheck'
* using R version 3.0.0 beta (2013-03-21 r62346)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'MBCB/DESCRIPTION' ... OK
* this is package 'MBCB' version '1.13.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'MBCB' can be installed ... [3s/5s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
bg.mcmc: no visible binding for global variable 'obsbead'
bg.mcmc: no visible binding for global variable 'obsnc'
esttruesig: no visible binding for global variable 'obsbead'
esttruesig: no visible binding for global variable 'truesignal'
liksig: no visible binding for global variable 'obsbead'
liksig.all: no visible binding for global variable 'obsbead'
liksig.all: no visible binding for global variable 'obsnc'
liksig.gamnoise: no visible binding for global variable 'nbead'
liksig.gamnoise: no visible binding for global variable 'sortedObsbead'
liksigall.gamnoise: no visible binding for global variable 'obsnc'
mbcb.correct: no visible binding for '<<-' assignment to 'trialNames'
mbcb.correct: no visible binding for '<<-' assignment to 'n.array'
mbcb.correct: no visible binding for '<<-' assignment to 'truesignal'
mbcb.correct: no visible binding for '<<-' assignment to 'truenoise'
mbcb.correct: no visible binding for '<<-' assignment to 'obsbead'
mbcb.correct: no visible binding for '<<-' assignment to 'obsnc'
mbcb.correct: no visible binding for '<<-' assignment to 'nbead'
mbcb.correct: no visible binding for global variable 'n.array'
mbcb.correct: no visible binding for global variable 'mbcbPB'
mbcb.correct: no visible binding for global variable 'obsbead'
mbcb.correct: no visible binding for '<<-' assignment to 'nnc'
mbcb.correct: no visible binding for '<<-' assignment to
  'sortedObsbead'
mbcb.correct: no visible binding for global variable 'obsnc'
mbcb.correct: no visible binding for global variable 'nbead'
mbcb.correct: no visible binding for global variable 'nnc'
mbcb.correct: no visible binding for global variable 'sortedObsbead'
mbcb.gui : actions.norm: no visible binding for global variable
  'main.nb'
mbcb.gui : normalizeData: no visible binding for global variable
  'main.nb'
mbcb.gui : exportData: no visible binding for global variable 'main.nb'
mbcb.gui : exportData : <anonymous>: no visible binding for global
  variable 'outFile'
mbcb.gui : exportData : setOut: no visible binding for '<<-' assignment
  to 'outFile'
mbcb.gui : exportData : setOut: no visible binding for global variable
  'outFile'
mbcb.gui : exportData : eval: no visible binding for '<<-' assignment
  to 'mbcbPB'
mbcb.gui : removeItem: no visible binding for global variable
  'importTab.f.dataList'
mbcb.gui: no visible binding for '<<-' assignment to 'main.nb'
mbcb.gui: no visible binding for global variable 'main.nb'
mbcb.main: no visible binding for global variable 'n.array'
mbcb.main: no visible binding for '<<-' assignment to 'bgCorrSig'
mbcb.main: no visible binding for global variable 'bgCorrSig'
mbcb.parseFile: no visible binding for global variable 'mbcbPB'
mbcb.parseFile: no visible binding for '<<-' assignment to 'types'
mbcb.parseFile: no visible binding for global variable 'types'
mbcb.parseFile: no visible binding for '<<-' assignment to 'sig2'
mbcb.parseFile: no visible binding for global variable 'sig2'
printMBCBOutput: no visible binding for '<<-' assignment to 'dete'
printMBCBOutput: no visible binding for global variable 'mbcbPB'
printMBCBOutput: no visible binding for global variable 'trialNames'
truesig: no visible binding for global variable 'obsbead'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [4s/4s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.12-bioc/meat/MBCB.Rcheck/00check.log'
for details.

MBCB.Rcheck/00install.out:

* installing *source* package 'MBCB' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'MBCB.Rnw' using 'UTF-8' 
** testing if installed package can be loaded
* DONE (MBCB)

MBCB.Rcheck/MBCB-Ex.timings:

nameusersystemelapsed
bg.mcmc1.5830.0981.688
bg.rma0.3770.0340.412
mbcb.correct0.0830.0370.121
mbcb.gui0.1950.0480.363
mbcb.main0.1070.0110.125
mbcb.parseFile0.0890.0110.110