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Package 308/658HostnameOS / ArchBUILDCHECKBUILD BIN
HilbertVis 1.17.0
Simon Anders
Snapshot Date: 2013-03-24 17:01:43 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/HilbertVis
Last Changed Rev: 72732 / Revision: 74774
Last Changed Date: 2013-01-21 10:10:41 -0800 (Mon, 21 Jan 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK [ WARNINGS ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 

Summary

Package: HilbertVis
Version: 1.17.0
Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings HilbertVis_1.17.0.tar.gz
StartedAt: 2013-03-25 02:21:20 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 02:21:58 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 38.4 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: HilbertVis.Rcheck
Warnings: 1

Command output

* using log directory ‘/home/biocbuild/bbs-2.12-bioc/meat/HilbertVis.Rcheck’
* using R version 3.0.0 beta (2013-03-19 r62328)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HilbertVis/DESCRIPTION’ ... OK
* this is package ‘HilbertVis’ version ‘1.17.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HilbertVis’ can be installed ... [3s/3s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
plotHilbertCurve: warning in viewport(x = 0.5, y = 0.5, width = 1,
  height = 1, default.unit = "snpc"): partial argument match of
  'default.unit' to 'default.units'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... WARNING
File ‘/home/biocbuild/bbs-2.12-bioc/meat/HilbertVis.Rcheck/HilbertVis/libs/HilbertVis.so’:
  Found ‘abort’, possibly from ‘abort’ (C)
    Object: ‘hilbert.o’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
* checking installed files from ‘inst/doc’ ... NOTE
The following files should probably not be installed:
  ‘HilbertVis.tex’, ‘Makefile’, ‘simon2.bst’

Consider the use of a .Rinstignore file: see ‘Writing R Extensions’,
or move the vignette sources from ‘inst/doc’ to ‘vignettes’.
* checking examples ... [9s/9s] OK
Examples with CPU or elapsed time > 5s
              user system elapsed
hilbertImage 7.184  0.352   7.539
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There were 2 notes.
See
  ‘/home/biocbuild/bbs-2.12-bioc/meat/HilbertVis.Rcheck/00check.log’
for details.

HilbertVis.Rcheck/00install.out:

* installing *source* package ‘HilbertVis’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.12-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c hilbert.c -o hilbert.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.12-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c make_wiggle_vector.c -o make_wiggle_vector.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.12-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c shrink_vector.c -o shrink_vector.o
gcc -std=gnu99 -shared -L/usr/local/lib -o HilbertVis.so hilbert.o make_wiggle_vector.o shrink_vector.o -L/home/biocbuild/bbs-2.12-bioc/R/lib -lR
installing to /home/biocbuild/bbs-2.12-bioc/meat/HilbertVis.Rcheck/HilbertVis/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘HilbertVis.Rnw’ 
** testing if installed package can be loaded
* DONE (HilbertVis)

HilbertVis.Rcheck/HilbertVis-Ex.timings:

nameusersystemelapsed
hilbertCurve0.0280.0040.031
hilbertImage7.1840.3527.539
makeRandomTestData0.0080.0000.010
makeWiggleVector0.0240.0080.033
plotHilbertCurve0.3080.0280.337
plotLongVector0.0880.0040.102
showHilbertImage0.0040.0000.005
shrinkVector0.0080.0040.011