GeneSelectMMD 2.3.2 Weiliang Qiu
Snapshot Date: 2013-03-24 17:01:43 -0700 (Sun, 24 Mar 2013) | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GeneSelectMMD | Last Changed Rev: 71219 / Revision: 74774 | Last Changed Date: 2012-11-14 13:15:22 -0800 (Wed, 14 Nov 2012) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
petty | Mac OS X Leopard (10.5.8) / i386 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GeneSelectMMD.buildbin-libdir GeneSelectMMD_2.3.2.tar.gz'
>>>>>>>
* installing *source* package 'GeneSelectMMD' ...
** libs
*** arch - i386
gfortran -arch i386 -fPIC -g -O2 -Wall -pedantic -c Qfunc.f -o Qfunc.o
gfortran -arch i386 -fPIC -g -O2 -Wall -pedantic -c blas.f -o blas.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c isnan.c -o isnan.o
gfortran -arch i386 -fPIC -g -O2 -Wall -pedantic -c lbfgsb.f -o lbfgsb.o
lbfgsb.f: In function 'cauchy':
lbfgsb.f:1409: warning: 'tu' may be used uninitialized in this function
lbfgsb.f:1409: warning: 'tl' may be used uninitialized in this function
gfortran -arch i386 -fPIC -g -O2 -Wall -pedantic -c lbfgsbDriver.f -o lbfgsbDriver.o
gfortran -arch i386 -fPIC -g -O2 -Wall -pedantic -c linpack.f -o linpack.o
gfortran -arch i386 -fPIC -g -O2 -Wall -pedantic -c llkhFun.f -o llkhFun.o
gfortran -arch i386 -fPIC -g -O2 -Wall -pedantic -c myTtest.f -o myTtest.o
gfortran -arch i386 -fPIC -g -O2 -Wall -pedantic -c paraEstLoop.f -o paraEstLoop.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c pt.c -o pt.o
gfortran -arch i386 -fPIC -g -O2 -Wall -pedantic -c timer.f -o timer.o
gfortran -arch i386 -fPIC -g -O2 -Wall -pedantic -c wiFun.f -o wiFun.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o GeneSelectMMD.so Qfunc.o blas.o isnan.o lbfgsb.o lbfgsbDriver.o linpack.o llkhFun.o myTtest.o paraEstLoop.o pt.o timer.o wiFun.o -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
'gsMMD.Rnw'
** testing if installed package can be loaded
* DONE (GeneSelectMMD)
>>>>>>>
>>>>>>> FIXING LINKS FOR GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs/i386/GeneSelectMMD.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs/i386/GeneSelectMMD.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs/i386/GeneSelectMMD.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs/i386/GeneSelectMMD.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs/i386/GeneSelectMMD.so"
>>>>>>>
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=GeneSelectMMD.buildbin-libdir --libs-only GeneSelectMMD_2.3.2.tar.gz'
>>>>>>>
* installing *source* package 'GeneSelectMMD' ...
** libs
*** arch - x86_64
gfortran -arch x86_64 -fPIC -g -O2 -Wall -pedantic -c Qfunc.f -o Qfunc.o
gfortran -arch x86_64 -fPIC -g -O2 -Wall -pedantic -c blas.f -o blas.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c isnan.c -o isnan.o
gfortran -arch x86_64 -fPIC -g -O2 -Wall -pedantic -c lbfgsb.f -o lbfgsb.o
lbfgsb.f: In function 'cauchy':
lbfgsb.f:1409: warning: 'tl' may be used uninitialized in this function
lbfgsb.f:1409: warning: 'tu' may be used uninitialized in this function
gfortran -arch x86_64 -fPIC -g -O2 -Wall -pedantic -c lbfgsbDriver.f -o lbfgsbDriver.o
gfortran -arch x86_64 -fPIC -g -O2 -Wall -pedantic -c linpack.f -o linpack.o
gfortran -arch x86_64 -fPIC -g -O2 -Wall -pedantic -c llkhFun.f -o llkhFun.o
gfortran -arch x86_64 -fPIC -g -O2 -Wall -pedantic -c myTtest.f -o myTtest.o
gfortran -arch x86_64 -fPIC -g -O2 -Wall -pedantic -c paraEstLoop.f -o paraEstLoop.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c pt.c -o pt.o
gfortran -arch x86_64 -fPIC -g -O2 -Wall -pedantic -c timer.f -o timer.o
gfortran -arch x86_64 -fPIC -g -O2 -Wall -pedantic -c wiFun.f -o wiFun.o
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o GeneSelectMMD.so Qfunc.o blas.o isnan.o lbfgsb.o lbfgsbDriver.o linpack.o llkhFun.o myTtest.o paraEstLoop.o pt.o timer.o wiFun.o -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs/x86_64
* DONE (GeneSelectMMD)
>>>>>>>
>>>>>>> FIXING LINKS FOR GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs/x86_64/GeneSelectMMD.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs/x86_64/GeneSelectMMD.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs/x86_64/GeneSelectMMD.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs/x86_64/GeneSelectMMD.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs/x86_64/GeneSelectMMD.so"