Package: DTA

Version: 2.5.1

Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings DTA_2.5.1.tar.gz

StartedAt: 2013-03-25 01:17:55 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 01:28:21 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 625.9 seconds

RetCode: 0

Status:  OK

CheckDir: DTA.Rcheck

Warnings: 0

* using log directory ‘/home/biocbuild/bbs-2.12-bioc/meat/DTA.Rcheck’
* using R version 3.0.0 beta (2013-03-19 r62328)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘DTA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DTA’ version ‘2.5.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DTA’ can be installed ... [3s/3s] OK
* checking installed package size ... NOTE
  installed size is 11.2Mb
  sub-directories of 1Mb or more:
    data   6.8Mb
    doc    4.2Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [552s/569s] OK
Examples with CPU or elapsed time > 5s
                        user system elapsed
DTA.dynamic.generate 197.168 27.597 232.621
DTA.estimate         125.752  7.373 137.650
DTA.generate         109.535  5.116 117.499
DTA.dynamic.estimate  72.752  0.104  74.215
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/home/biocbuild/bbs-2.12-bioc/meat/DTA.Rcheck/00check.log’
for details.

* installing *source* package ‘DTA’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘DTA.Rnw’ 
** testing if installed package can be loaded
* DONE (DTA)

name	user	system	elapsed
DTA-package	0.012	0.000	0.009
DTA.dynamic.estimate	72.752	0.104	74.215
DTA.dynamic.generate	197.168	27.597	232.621
DTA.estimate	125.752	7.373	137.650
DTA.generate	109.535	5.116	117.499
DTA.map.it	0.004	0.000	0.005
DTA.normalize	0.004	0.000	0.005
DTA.phenomat	0.008	0.000	0.008
DTA.plot.it	0.048	0.004	0.094
tls	3.328	1.292	4.798