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Package 122/658HostnameOS / ArchBUILDCHECKBUILD BIN
ChromHeatMap 1.13.1
Tim F. Rayner
Snapshot Date: 2013-03-23 17:02:20 -0700 (Sat, 23 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ChromHeatMap
Last Changed Rev: 71229 / Revision: 74756
Last Changed Date: 2012-11-14 16:20:42 -0800 (Wed, 14 Nov 2012)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
pelham Mac OS X Snow Leopard (10.6.8) / x86_64  OK [ OK ] OK 

Summary

Package: ChromHeatMap
Version: 1.13.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch ChromHeatMap_1.13.1.tar.gz
StartedAt: 2013-03-24 03:42:55 -0700 (Sun, 24 Mar 2013)
EndedAt: 2013-03-24 03:48:10 -0700 (Sun, 24 Mar 2013)
EllapsedTime: 314.7 seconds
RetCode: 0
Status:  OK 
CheckDir: ChromHeatMap.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/ChromHeatMap.Rcheck'
* using R version 3.0.0 beta (2013-03-21 r62346)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'ChromHeatMap/DESCRIPTION' ... OK
* this is package 'ChromHeatMap' version '1.13.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'ChromHeatMap' can be installed ... [29s/30s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [19s/27s] OK
Examples with CPU or elapsed time > 5s
                    user system elapsed
makeRangedDataList 2.112  0.352  10.265
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

ChromHeatMap.Rcheck/00install.out:

* installing *source* package 'ChromHeatMap' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'ChromHeatMap.Rnw' 
** testing if installed package can be loaded
* DONE (ChromHeatMap)

ChromHeatMap.Rcheck/ChromHeatMap-Ex.timings:

nameusersystemelapsed
ChrMapPlot-class0.7850.0390.828
ChrStrandData-class0.1480.0190.333
ChrStrandMatrix-class0.0980.0030.102
chrHeatMap0.1340.0050.140
createChrMatrix0.0980.0040.103
drawMapDendro0.1390.0060.146
grabChrMapProbes0.3370.0120.350
makeChrStrandData0.1390.0050.143
makeRangedDataList 2.112 0.35210.265
plotChrMap0.2990.0070.309