Package: ADaCGH2

Version: 1.9.0

Command: rm -rf ADaCGH2.buildbin-libdir && mkdir ADaCGH2.buildbin-libdir && /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL --build --no-multiarch --library=ADaCGH2.buildbin-libdir ADaCGH2_1.9.0.tar.gz

StartedAt: 2013-03-24 11:21:52 -0700 (Sun, 24 Mar 2013)

EndedAt: 2013-03-24 11:22:16 -0700 (Sun, 24 Mar 2013)

EllapsedTime: 24.1 seconds

RetCode: 0

Status:  OK

PackageFile: ADaCGH2_1.9.0.tgz

PackageFileSize: 462.3 KiB

* installing *source* package 'ADaCGH2' ...
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c r_haarseg.c -o r_haarseg.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o ADaCGH2.so r_haarseg.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/ADaCGH2.buildbin-libdir/ADaCGH2/libs
** R
** data
** inst
** preparing package for lazy loading
'.find.package' is deprecated.
Use 'find.package' instead.
See help("Deprecated")
'.find.package' is deprecated.
Use 'find.package' instead.
See help("Deprecated")
'.find.package' is deprecated.
Use 'find.package' instead.
See help("Deprecated")
Setting adacgh_changepoints to DNAcopy:::changepoints
Setting adacgh_trimmed.variance to DNAcopy:::trimmed.variance
** help
*** installing help indices
** building package indices
** installing vignettes
   'ADaCGH2.Rnw' using 'latin1' 
** testing if installed package can be loaded
'.find.package' is deprecated.
Use 'find.package' instead.
See help("Deprecated")
'.find.package' is deprecated.
Use 'find.package' instead.
See help("Deprecated")
'.find.package' is deprecated.
Use 'find.package' instead.
See help("Deprecated")
packaged installation of 'ADaCGH2' as 'ADaCGH2_1.9.0.tgz'
* DONE (ADaCGH2)