Package: survcomp

Version: 1.8.1

Command: /home/biocbuild/bbs-2.11-bioc/R/bin/R CMD check --no-vignettes --timings survcomp_1.8.1.tar.gz

StartedAt: 2013-03-25 05:16:02 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 05:16:59 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 56.9 seconds

RetCode: 0

Status:  OK

CheckDir: survcomp.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.11-bioc/meat/survcomp.Rcheck’
* using R version 2.15.3 (2013-03-01)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘survcomp/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘survcomp’ version ‘1.8.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘survcomp’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘survcomp’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.11-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c concordance.index.c -o concordance.index.o
g++ -I/home/biocbuild/bbs-2.11-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c foo_mrmr_ensemble_surv.cpp -o foo_mrmr_ensemble_surv.o
foo_mrmr_ensemble_surv.cpp: In function ‘double get_correlation_ensemble(double*, int*, int, int, int)’:
foo_mrmr_ensemble_surv.cpp:12:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:22:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp: In function ‘double returnConcordanceIndexC(int*, int*, double*, int*, double*, int*, double*, int*, int*, int*, int, int*)’:
foo_mrmr_ensemble_surv.cpp:106:10: warning: variable ‘uhs’ set but not used [-Wunused-but-set-variable]
foo_mrmr_ensemble_surv.cpp:107:10: warning: variable ‘rphs’ set but not used [-Wunused-but-set-variable]
foo_mrmr_ensemble_surv.cpp: In function ‘void build_mim_cIndex_subset(double*, double*, int*, int, int, int*, int, int*, int*, int*, double*, int*, double*, int*, int*, int*, int*)’:
foo_mrmr_ensemble_surv.cpp:202:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:214:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:216:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:191:17: warning: unused variable ‘msurv_x’ [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp:191:27: warning: unused variable ‘ustrat_x’ [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp: In function ‘void bootstrap_tree(tree<int>&, tree<double>&, double*, int*, int, int, int, int*, int*, double*, int*, double*, int*, double*, int*, int*, int*, int, int*)’:
foo_mrmr_ensemble_surv.cpp:351:7: warning: unused variable ‘cnt_back’ [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp:286:7: warning: unused variable ‘nsub’ [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp: In function ‘void bootstrap_mrmr(double&, double&, double*, int*, int, int, int, int, int, int, int, int*, int*, int*, double*, int*, double*, int*, double*, int*, int*, int*, int, int*)’:
foo_mrmr_ensemble_surv.cpp:393:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:396:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:400:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:401:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:412:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:419:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:387:10: warning: unused variable ‘mim’ [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp: In function ‘double mrnet_onegene(double*, int, int, int*, int, int)’:
foo_mrmr_ensemble_surv.cpp:448:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:437:15: warning: variable ‘jmax’ set but not used [-Wunused-but-set-variable]
foo_mrmr_ensemble_surv.cpp:439:9: warning: unused variable ‘max_val’ [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp: In function ‘int verify_equivalentset_nparents(tree<int>&, tree<int>::pre_order_iterator, tree<int>::pre_order_iterator, tree<double>&, int)’:
foo_mrmr_ensemble_surv.cpp:467:7: warning: unused variable ‘found’ [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp: In function ‘void mrmr_ensemble_one_gene_remove(tree<int>&, tree<int>::pre_order_iterator, double*, int*, int, int, int, int, int, int, double, int*, int*, double*, int*, double*, int*, double*, int*, int*, int*, int, int*)’:
foo_mrmr_ensemble_surv.cpp:593:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:596:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:597:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:604:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:646:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:654:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:657:69: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:661:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:578:24: warning: unused variable ‘nsamples_boot’ [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp:578:48: warning: unused variable ‘tmp_val_max_ind’ [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp:578:66: warning: unused variable ‘prev_sel_tmp’ [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp:579:21: warning: unused variable ‘vec_sort’ [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp:579:63: warning: variable ‘vec_local_max_sd’ set but not used [-Wunused-but-set-variable]
foo_mrmr_ensemble_surv.cpp: In function ‘SEXPREC* mrmr_cIndex_ensemble_remove(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
foo_mrmr_ensemble_surv.cpp:785:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:819:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:833:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:842:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_ensemble_surv.cpp:800:13: warning: unused variable ‘cnt2’ [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp:803:7: warning: unused variable ‘rootdepth’ [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp:816:7: warning: unused variable ‘ind’ [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp:732:30: warning: unused variable ‘res_all’ [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp:732:39: warning: unused variable ‘res_all2’ [-Wunused-variable]
foo_mrmr_ensemble_surv.cpp:733:6: warning: unused variable ‘vec_tmp’ [-Wunused-variable]
In file included from foo_mrmr_ensemble_surv.h:10:0,
                 from foo_mrmr_ensemble_surv.cpp:1:
tree.h: In static member function ‘static int tree<T, tree_node_allocator>::depth(const tree<T, tree_node_allocator>::iterator_base&) [with T = int, tree_node_allocator = std::allocator<tree_node_<int> >]’:
foo_mrmr_ensemble_surv.cpp:250:28:   instantiated from here
tree.h:1635:2: warning: statement has no effect [-Wunused-value]
tree.h: In static member function ‘static iter tree<T, tree_node_allocator>::parent(iter) [with iter = tree<int>::pre_order_iterator, T = int, tree_node_allocator = std::allocator<tree_node_<int> >]’:
foo_mrmr_ensemble_surv.cpp:258:24:   instantiated from here
tree.h:756:2: warning: statement has no effect [-Wunused-value]
tree.h: In static member function ‘static iter tree<T, tree_node_allocator>::parent(iter) [with iter = tree<double>::pre_order_iterator, T = double, tree_node_allocator = std::allocator<tree_node_<double> >]’:
foo_mrmr_ensemble_surv.cpp:258:61:   instantiated from here
tree.h:756:2: warning: statement has no effect [-Wunused-value]
In file included from foo_mrmr_ensemble_surv.h:10:0,
                 from foo_mrmr_ensemble_surv.cpp:1:
tree.h: In member function ‘iter tree<T, tree_node_allocator>::erase(iter) [with iter = tree<int>::pre_order_iterator, T = int, tree_node_allocator = std::allocator<tree_node_<int> >]’:
foo_mrmr_ensemble_surv.cpp:267:24:   instantiated from here
tree.h:589:2: warning: statement has no effect [-Wunused-value]
tree.h: In member function ‘iter tree<T, tree_node_allocator>::erase(iter) [with iter = tree<double>::pre_order_iterator, T = double, tree_node_allocator = std::allocator<tree_node_<double> >]’:
foo_mrmr_ensemble_surv.cpp:267:54:   instantiated from here
tree.h:589:2: warning: statement has no effect [-Wunused-value]
In file included from foo_mrmr_ensemble_surv.h:10:0,
                 from foo_mrmr_ensemble_surv.cpp:1:
tree.h: In member function ‘tree<T, tree_node_allocator>::pre_order_iterator& tree<T, tree_node_allocator>::pre_order_iterator::operator++() [with T = int, tree_node_allocator = std::allocator<tree_node_<int> >]’:
foo_mrmr_ensemble_surv.cpp:281:6:   instantiated from here
tree.h:2046:2: warning: statement has no effect [-Wunused-value]
tree.h: In member function ‘tree<T, tree_node_allocator>::pre_order_iterator& tree<T, tree_node_allocator>::pre_order_iterator::operator++() [with T = double, tree_node_allocator = std::allocator<tree_node_<double> >]’:
foo_mrmr_ensemble_surv.cpp:281:12:   instantiated from here
tree.h:2046:2: warning: statement has no effect [-Wunused-value]
In file included from foo_mrmr_ensemble_surv.h:10:0,
                 from foo_mrmr_ensemble_surv.cpp:1:
tree.h: In member function ‘iter tree<T, tree_node_allocator>::erase(iter) [with iter = tree<double>::leaf_iterator, T = double, tree_node_allocator = std::allocator<tree_node_<double> >]’:
foo_mrmr_ensemble_surv.cpp:560:27:   instantiated from here
tree.h:589:2: warning: statement has no effect [-Wunused-value]
In file included from foo_mrmr_ensemble_surv.h:10:0,
                 from foo_mrmr_ensemble_surv.cpp:1:
tree.h: In member function ‘iter tree<T, tree_node_allocator>::append_child(iter, const T&) [with iter = tree<int>::pre_order_iterator, T = int, tree_node_allocator = std::allocator<tree_node_<int> >]’:
foo_mrmr_ensemble_surv.cpp:690:55:   instantiated from here
tree.h:883:2: warning: statement has no effect [-Wunused-value]
tree.h:884:2: warning: statement has no effect [-Wunused-value]
tree.h: In member function ‘iter tree<T, tree_node_allocator>::append_child(iter, const T&) [with iter = tree<double>::pre_order_iterator, T = double, tree_node_allocator = std::allocator<tree_node_<double> >]’:
foo_mrmr_ensemble_surv.cpp:691:62:   instantiated from here
tree.h:883:2: warning: statement has no effect [-Wunused-value]
tree.h:884:2: warning: statement has no effect [-Wunused-value]
tree.h: In member function ‘tree<T, tree_node_allocator>::breadth_first_queued_iterator& tree<T, tree_node_allocator>::breadth_first_queued_iterator::operator++() [with T = int, tree_node_allocator = std::allocator<tree_node_<int> >]’:
foo_mrmr_ensemble_surv.cpp:808:6:   instantiated from here
tree.h:2273:2: warning: statement has no effect [-Wunused-value]
tree.h: In member function ‘tree<T, tree_node_allocator>::pre_order_iterator& tree<T, tree_node_allocator>::pre_order_iterator::operator--() [with T = int, tree_node_allocator = std::allocator<tree_node_<int> >]’:
tree.h:2091:3:   instantiated from ‘tree<T, tree_node_allocator>::pre_order_iterator tree<T, tree_node_allocator>::pre_order_iterator::operator--(int) [with T = int, tree_node_allocator = std::allocator<tree_node_<int> >]’
foo_mrmr_ensemble_surv.cpp:355:6:   instantiated from here
tree.h:2065:2: warning: statement has no effect [-Wunused-value]
tree.h: In member function ‘tree<T, tree_node_allocator>::pre_order_iterator& tree<T, tree_node_allocator>::pre_order_iterator::operator--() [with T = double, tree_node_allocator = std::allocator<tree_node_<double> >]’:
tree.h:2091:3:   instantiated from ‘tree<T, tree_node_allocator>::pre_order_iterator tree<T, tree_node_allocator>::pre_order_iterator::operator--(int) [with T = double, tree_node_allocator = std::allocator<tree_node_<double> >]’
foo_mrmr_ensemble_surv.cpp:355:16:   instantiated from here
tree.h:2065:2: warning: statement has no effect [-Wunused-value]
tree.h: In member function ‘tree<T, tree_node_allocator>::leaf_iterator& tree<T, tree_node_allocator>::leaf_iterator::operator++() [with T = int, tree_node_allocator = std::allocator<tree_node_<int> >]’:
tree.h:2673:4:   instantiated from ‘tree<T, tree_node_allocator>::leaf_iterator tree<T, tree_node_allocator>::leaf_iterator::operator++(int) [with T = int, tree_node_allocator = std::allocator<tree_node_<int> >]’
foo_mrmr_ensemble_surv.cpp:502:5:   instantiated from here
tree.h:2636:2: warning: statement has no effect [-Wunused-value]
tree.h: In member function ‘tree<T, tree_node_allocator>::leaf_iterator& tree<T, tree_node_allocator>::leaf_iterator::operator++() [with T = double, tree_node_allocator = std::allocator<tree_node_<double> >]’:
tree.h:2673:4:   instantiated from ‘tree<T, tree_node_allocator>::leaf_iterator tree<T, tree_node_allocator>::leaf_iterator::operator++(int) [with T = double, tree_node_allocator = std::allocator<tree_node_<double> >]’
foo_mrmr_ensemble_surv.cpp:526:22:   instantiated from here
tree.h:2636:2: warning: statement has no effect [-Wunused-value]
tree.h: In member function ‘tree<T, tree_node_allocator>::leaf_iterator& tree<T, tree_node_allocator>::leaf_iterator::operator--() [with T = int, tree_node_allocator = std::allocator<tree_node_<int> >]’:
tree.h:2681:4:   instantiated from ‘tree<T, tree_node_allocator>::leaf_iterator tree<T, tree_node_allocator>::leaf_iterator::operator--(int) [with T = int, tree_node_allocator = std::allocator<tree_node_<int> >]’
foo_mrmr_ensemble_surv.cpp:554:6:   instantiated from here
tree.h:2657:2: warning: statement has no effect [-Wunused-value]
tree.h: In member function ‘tree<T, tree_node_allocator>::leaf_iterator& tree<T, tree_node_allocator>::leaf_iterator::operator--() [with T = double, tree_node_allocator = std::allocator<tree_node_<double> >]’:
tree.h:2681:4:   instantiated from ‘tree<T, tree_node_allocator>::leaf_iterator tree<T, tree_node_allocator>::leaf_iterator::operator--(int) [with T = double, tree_node_allocator = std::allocator<tree_node_<double> >]’
foo_mrmr_ensemble_surv.cpp:554:16:   instantiated from here
tree.h:2657:2: warning: statement has no effect [-Wunused-value]
tree.h: In member function ‘iter tree<T, tree_node_allocator>::replace(iter, const tree<T, tree_node_allocator>::iterator_base&) [with iter = tree<int>::pre_order_iterator, T = int, tree_node_allocator = std::allocator<tree_node_<int> >]’:
tree.h:547:3:   instantiated from ‘void tree<T, tree_node_allocator>::copy_(const tree<T, tree_node_allocator>&) [with T = int, tree_node_allocator = std::allocator<tree_node_<int> >]’
tree.h:531:2:   instantiated from ‘tree<T, tree_node_allocator>::tree(const tree<T, tree_node_allocator>&) [with T = int, tree_node_allocator = std::allocator<tree_node_<int> >]’
foo_mrmr_ensemble_surv.cpp:611:24:   instantiated from here
tree.h:1113:2: warning: statement has no effect [-Wunused-value]
tree.h:547:3:   instantiated from ‘void tree<T, tree_node_allocator>::copy_(const tree<T, tree_node_allocator>&) [with T = int, tree_node_allocator = std::allocator<tree_node_<int> >]’
tree.h:531:2:   instantiated from ‘tree<T, tree_node_allocator>::tree(const tree<T, tree_node_allocator>&) [with T = int, tree_node_allocator = std::allocator<tree_node_<int> >]’
foo_mrmr_ensemble_surv.cpp:611:24:   instantiated from here
tree.h:1153:3: warning: statement has no effect [-Wunused-value]
tree.h:1162:5: warning: statement has no effect [-Wunused-value]
foo_mrmr_ensemble_surv.cpp: In function ‘SEXPREC* mrmr_cIndex_ensemble_remove(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
foo_mrmr_ensemble_surv.cpp:790:199: warning: ‘x2’ may be used uninitialized in this function [-Wuninitialized]
foo_mrmr_ensemble_surv.cpp:858:9: warning: ‘Rres’ may be used uninitialized in this function [-Wuninitialized]
foo_mrmr_ensemble_surv.cpp:820:25: warning: ‘res_old’ may be used uninitialized in this function [-Wuninitialized]
g++ -I/home/biocbuild/bbs-2.11-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c foo_mrmr_surv.cpp -o foo_mrmr_surv.o
foo_mrmr_surv.cpp: In function ‘double get_correlation(double*, int*, int, int, int)’:
foo_mrmr_surv.cpp:12:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_surv.cpp:22:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_surv.cpp: In function ‘void build_mim_subset(double*, double*, int*, int, int, int*, int)’:
foo_mrmr_surv.cpp:49:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_surv.cpp:50:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_surv.cpp:56:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_surv.cpp:58:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_surv.cpp: In function ‘double returnConcordanceIndexC(int*, int*, double*, int*, double*, int*, double*, int*, int*, int*, int*, int*)’:
foo_mrmr_surv.cpp:146:10: warning: variable ‘uhs’ set but not used [-Wunused-but-set-variable]
foo_mrmr_surv.cpp:147:10: warning: variable ‘rphs’ set but not used [-Wunused-but-set-variable]
foo_mrmr_surv.cpp: In function ‘SEXPREC* mrmr_cIndex(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
foo_mrmr_surv.cpp:300:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
foo_mrmr_surv.cpp:340:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
g++ -shared -L/usr/local/lib64 -o survcomp.so concordance.index.o foo_mrmr_ensemble_surv.o foo_mrmr_surv.o -L/home/biocbuild/bbs-2.11-bioc/R/lib -lR
installing to /loc/home/biocbuild/bbs-2.11-bioc/meat/survcomp.Rcheck/survcomp/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘survcomp.Rnw’ 
** testing if installed package can be loaded

* DONE (survcomp)

name	user	system	elapsed
D.index	0.024	0.000	0.055
breastCancerData	1.176	0.056	1.538
censor.time	0.000	0.000	0.001
cindex.comp	0.032	0.000	0.028
cindex.comp.meta	0.008	0.000	0.007
combine.est	0.000	0.000	0.001
combine.test	0	0	0
concordance.index	0.004	0.000	0.005
cvpl	0.420	0.012	0.544
dindex.comp	0.016	0.000	0.015
dindex.comp.meta	0.032	0.000	0.032
fisherz	0	0	0
forestplot.surv	0.084	0.004	0.121
getsurv2	0.004	0.004	0.007
hazard.ratio	0.008	0.004	0.011
hr.comp	0.02	0.00	0.02
hr.comp.meta	0.032	0.000	0.031
hr.comp2	0.012	0.000	0.010
iauc.comp	0.688	0.004	0.800
ibsc.comp	0.304	0.008	0.760
km.coxph.plot	0.040	0.000	0.144
logpl	0.028	0.000	0.028
mainz7g	0.448	0.012	0.744
metaplot.surv	0.004	0.000	0.004
mrmr.cindex	0.000	0.004	0.003
nki7g	0.228	0.024	0.323
no.at.risk	0.032	0.000	0.035
sbrier.score2proba	0.240	0.004	0.356
score2proba	0.020	0.000	0.022
td.sens.spec	0.000	0.000	0.002
tdrocc	0.356	0.004	0.398
test.hetero.est	0.000	0.000	0.001
test.hetero.test	0.004	0.000	0.000
transbig7g	0.220	0.020	0.249
unt7g	0.232	0.020	0.252
upp7g	0.244	0.012	0.385
vdx7g	0.252	0.012	0.363