Package: stepwiseCM

Version: 1.4.0

Command: /home/biocbuild/bbs-2.11-bioc/R/bin/R CMD check --no-vignettes --timings stepwiseCM_1.4.0.tar.gz

StartedAt: 2013-03-25 05:15:03 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 05:19:26 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 262.2 seconds

RetCode: 0

Status:  OK

CheckDir: stepwiseCM.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.11-bioc/meat/stepwiseCM.Rcheck’
* using R version 2.15.3 (2013-03-01)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘stepwiseCM/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘stepwiseCM’ version ‘1.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘stepwiseCM’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... NOTE
Non-standard license specification:
  GPL (http://www.gnu.org/copyleft/gpl.html)
Standardizable: TRUE
Standardized license specification:
  GPL
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Classifier.par: no visible binding for global variable ‘stepwiseCM’
Proximity: no visible binding for global variable ‘Stepwise’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                     user system elapsed
stepwiseCM-package 33.190  0.192  36.857
Curve.generator    31.818  0.072  33.668
Step.pred          29.670  0.096  32.137
RS.generator       26.962  0.088  29.054
Classifier         18.889  0.140  20.681
Proximity          17.221  0.176  18.263
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  ‘/loc/home/biocbuild/bbs-2.11-bioc/meat/stepwiseCM.Rcheck/00check.log’
for details.

* installing *source* package ‘stepwiseCM’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘stepwiseCM.Rnw’ 
** testing if installed package can be loaded

* DONE (stepwiseCM)

name	user	system	elapsed
CNS	0.156	0.016	0.173
Classifier	18.889	0.140	20.681
Classifier.par	0.148	0.112	0.259
Curve.generator	31.818	0.072	33.668
Proximity	17.221	0.176	18.263
RS.generator	26.962	0.088	29.054
Step.pred	29.670	0.096	32.137
stepwiseCM-package	33.190	0.192	36.857