Package: nucleR

Version: 1.6.0

Command: /home/biocbuild/bbs-2.11-bioc/R/bin/R CMD check --no-vignettes --timings nucleR_1.6.0.tar.gz

StartedAt: 2013-03-25 03:23:08 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 03:26:24 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 196.1 seconds

RetCode: 0

Status:  OK

CheckDir: nucleR.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.11-bioc/meat/nucleR.Rcheck’
* using R version 2.15.3 (2013-03-01)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘nucleR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘nucleR’ version ‘1.6.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘nucleR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘nucleR’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘nucleR.Rnw’ 
** testing if installed package can be loaded

* DONE (nucleR)

name	user	system	elapsed
controlCorrection	0.056	0.000	0.054
coverage.rpm	0.156	0.000	0.157
export.bed	0	0	0
export.wig	0.004	0.000	0.000
filterFFT	0.128	0.000	0.128
fragmentLenDetect	1.220	0.000	1.491
mergeCalls	0.472	0.000	0.489
nucleR-package	0.940	0.008	1.108
pcKeepCompDetect	0.176	0.004	0.194
peakDetection	0.580	0.004	0.596
peakScoring	0.128	0.012	0.142
plotPeaks	0.828	0.012	0.848
processReads	0.188	0.012	0.214
processTilingArray	0	0	0
syntheticNucMap	0.312	0.008	0.328