nem 2.34.0
Holger Froehlich
| Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/nem | | Last Changed Rev: 70050 / Revision: 74773 | | Last Changed Date: 2012-10-01 15:16:24 -0700 (Mon, 01 Oct 2012) |
| lamb1 | Linux (openSUSE 12.1) / x86_64 | OK | OK | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| perceval | Mac OS X Leopard (10.5.8) / i386 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=nem.buildbin-libdir nem_2.34.0.tar.gz'
>>>>>>>
* installing *source* package 'nem' ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c MCMC.c -o MCMC.o
MCMC.c: In function 'network_likelihood':
MCMC.c:115: warning: suggest parentheses around comparison in operand of &
MCMC.c:124: warning: suggest parentheses around comparison in operand of &
MCMC.c: In function 'MCMCrun':
MCMC.c:402: warning: unused variable 'stored2'
MCMC.c:401: warning: unused variable 'stored'
MCMC.c:358: warning: unused variable 'mutinf'
MCMC.c: In function 'network_likelihood':
MCMC.c:107: warning: 'max_loglik0_idx' may be used uninitialized in this function
MCMC.c: In function 'MCMCrun':
MCMC.c:406: warning: 'priorScale_new' may be used uninitialized in this function
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c netlearn.c -o netlearn.o
netlearn.c: In function 'learn_network':
netlearn.c:168: warning: unused variable 'lik_switch'
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c wrapper.c -o wrapper.o
wrapper.c: In function 'MCMCrunWrapper':
wrapper.c:107: warning: suggest parentheses around comparison in operand of &
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o nem.so MCMC.o netlearn.o wrapper.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/nem.buildbin-libdir/nem/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
'nem.Rnw' using 'latin1'
** testing if installed package can be loaded
* DONE (nem)
>>>>>>>
>>>>>>> FIXING LINKS FOR nem.buildbin-libdir/nem/libs/i386/nem.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "nem.buildbin-libdir/nem/libs/i386/nem.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "nem.buildbin-libdir/nem/libs/i386/nem.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "nem.buildbin-libdir/nem/libs/i386/nem.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "nem.buildbin-libdir/nem/libs/i386/nem.so"
>>>>>>>
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=nem.buildbin-libdir --libs-only nem_2.34.0.tar.gz'
>>>>>>>
* installing *source* package 'nem' ...
** libs
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c MCMC.c -o MCMC.o
MCMC.c: In function 'network_likelihood':
MCMC.c:115: warning: suggest parentheses around comparison in operand of &
MCMC.c:124: warning: suggest parentheses around comparison in operand of &
MCMC.c: In function 'MCMCrun':
MCMC.c:402: warning: unused variable 'stored2'
MCMC.c:401: warning: unused variable 'stored'
MCMC.c:358: warning: unused variable 'mutinf'
MCMC.c: In function 'network_likelihood':
MCMC.c:107: warning: 'max_loglik0_idx' may be used uninitialized in this function
MCMC.c: In function 'MCMCrun':
MCMC.c:406: warning: 'priorScale_new' may be used uninitialized in this function
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c netlearn.c -o netlearn.o
netlearn.c: In function 'learn_network':
netlearn.c:168: warning: unused variable 'lik_switch'
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c wrapper.c -o wrapper.o
wrapper.c: In function 'MCMCrunWrapper':
wrapper.c:107: warning: suggest parentheses around comparison in operand of &
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o nem.so MCMC.o netlearn.o wrapper.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/nem.buildbin-libdir/nem/libs/x86_64
* DONE (nem)
>>>>>>>
>>>>>>> FIXING LINKS FOR nem.buildbin-libdir/nem/libs/x86_64/nem.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "nem.buildbin-libdir/nem/libs/x86_64/nem.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "nem.buildbin-libdir/nem/libs/x86_64/nem.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "nem.buildbin-libdir/nem/libs/x86_64/nem.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "nem.buildbin-libdir/nem/libs/x86_64/nem.so"