mosaics 1.5.0
Dongjun Chung
| Snapshot Date: 2012-06-20 15:22:40 -0700 (Wed, 20 Jun 2012) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/mosaics | | Last Changed Rev: 64680 / Revision: 66885 | | Last Changed Date: 2012-03-30 15:15:56 -0700 (Fri, 30 Mar 2012) |
| lamb1 | Linux (openSUSE 12.1) / x86_64 | ERROR | skipped | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | ERROR | skipped | skipped |
| pitt | Mac OS X Leopard (10.5.8) / i386 | [ ERROR ] | skipped | skipped |
| perceval | Mac OS X Leopard (10.5.8) / i386 | ERROR | skipped | skipped |
* checking for file 'mosaics/DESCRIPTION' ... OK
* preparing 'mosaics':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: Rcpp
Info: reading and preprocessing bin-level data...
Info: data contains only one chromosome.
Info: done!
Info: background estimation method is determined based on data.
Info: background estimation based on bins with low tag counts.
Info: two-sample analysis (Input only).
Info: use adaptive griding.
Info: fitting background model...
Warning in rlm.default(x, y, weights, method = method, wt.method = wt.method, :
rlm failed to converge in 20 steps
Info: done!
Info: fitting one-signal-component model...
Info: fitting two-signal-component model...
Info: calculating BIC of fitted models...
Info: done!
Info: use two-signal-component model.
Info: calculating posterior probabilities...
Info: calling peaks...
Error: processing vignette 'mosaics-example.Rnw' failed with diagnostics:
chunk 16 (label = ts-mosaicspeak)
Error : 'matchMatrix' is defunct.
Use 'as.matrix' instead.
See help("Defunct")
Execution halted