Package: lmdme

Version: 1.0.0

Command: rm -rf lmdme.buildbin-libdir && mkdir lmdme.buildbin-libdir && D:\biocbld\bbs-2.11-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=lmdme.buildbin-libdir lmdme_1.0.0.tar.gz >lmdme-install.out 2>&1 && D:\biocbld\bbs-2.11-bioc\R\bin\R.exe CMD check --library=lmdme.buildbin-libdir --install="check:lmdme-install.out" --force-multiarch --no-vignettes --timings lmdme_1.0.0.tar.gz && mv lmdme.buildbin-libdir/* lmdme.Rcheck/ && rmdir lmdme.buildbin-libdir

StartedAt: 2013-03-25 01:48:10 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 01:51:55 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 225.0 seconds

RetCode: 0

Status:  OK

CheckDir: lmdme.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.11-bioc/meat/lmdme.Rcheck'
* using R version 2.15.3 (2013-03-01)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'lmdme/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'lmdme' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'lmdme' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
permutation,formula-data.frame-data.frame: no visible binding for
  global variable 'mclapply'
permutation,formula-data.frame-data.frame: no visible global function
  definition for 'detectCores'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                     user system elapsed
lmDME-permutation   21.27   0.77   22.04
lmDME-biplot         8.22   0.41    8.63
lmDME-loadingplot    7.31   0.14    7.46
lmDME-leverage       7.24   0.15    7.40
lmDME-padjust        7.24   0.15    7.41
lmDME-getters        7.13   0.24    7.36
lmDME-decomposition  6.81   0.45    7.26
lmDME-screeplot      6.85   0.05    6.89
lmDME-lmdme          6.70   0.05    6.74
lmDME-printshow      6.24   0.20    6.45
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                     user system elapsed
lmDME-permutation   20.69   1.30   21.99
lmDME-biplot         8.94   0.39    9.33
lmDME-padjust        8.93   0.26    9.19
lmDME-decomposition  8.08   0.54    8.66
lmDME-getters        8.34   0.24    8.58
lmDME-leverage       8.11   0.20    8.31
lmDME-loadingplot    7.61   0.24    7.85
lmDME-screeplot      7.49   0.35    7.83
lmDME-lmdme          7.02   0.34    7.36
lmDME-printshow      6.75   0.29    7.05
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'D:/biocbld/bbs-2.11-bioc/meat/lmdme.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'lmdme' ...
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'fitted.values' from package 'stats' in package 'lmdme'
Creating a generic function for 'fitted' from package 'stats' in package 'lmdme'
Creating a generic function for 'coef' from package 'stats' in package 'lmdme'
Creating a generic function for 'coefficients' from package 'stats' in package 'lmdme'
Creating a generic function for 'resid' from package 'stats' in package 'lmdme'
Creating a generic function for 'residuals' from package 'stats' in package 'lmdme'
Creating a generic function for 'print' from package 'base' in package 'lmdme'
Creating a generic function for 'summary' from package 'base' in package 'lmdme'
Creating a new generic function for 'p.adjust' in package 'lmdme'
Creating a generic function for 'biplot' from package 'stats' in package 'lmdme'
Creating a generic function for 'screeplot' from package 'stats' in package 'lmdme'
Creating a generic function for 'loadingplot' from package 'pls' in package 'lmdme'
** help
*** installing help indices
** building package indices
** installing vignettes
   'lmdme-vignette.Rnw' using 'latin1' 
** testing if installed package can be loaded

install for x64

* installing *source* package 'lmdme' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'lmdme' as lmdme_1.0.0.zip

* DONE (lmdme)