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Package 315/609HostnameOS / ArchBUILDCHECKBUILD BIN
iontree 1.4.0
Mingshu Cao
Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/iontree
Last Changed Rev: 70050 / Revision: 74773
Last Changed Date: 2012-10-01 15:16:24 -0700 (Mon, 01 Oct 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ OK ] OK 
perceval Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: iontree
Version: 1.4.0
Command: rm -rf iontree.buildbin-libdir && mkdir iontree.buildbin-libdir && D:\biocbld\bbs-2.11-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=iontree.buildbin-libdir iontree_1.4.0.tar.gz >iontree-install.out 2>&1 && D:\biocbld\bbs-2.11-bioc\R\bin\R.exe CMD check --library=iontree.buildbin-libdir --install="check:iontree-install.out" --force-multiarch --no-vignettes --timings iontree_1.4.0.tar.gz && mv iontree.buildbin-libdir/* iontree.Rcheck/ && rmdir iontree.buildbin-libdir
StartedAt: 2013-03-25 01:40:23 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 01:41:24 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 61.0 seconds
RetCode: 0
Status:  OK  
CheckDir: iontree.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.11-bioc/meat/iontree.Rcheck'
* using R version 2.15.3 (2013-03-01)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'iontree/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'iontree' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'iontree' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: buildIonTree.Rd:18-19: Dropping empty section \details
prepare_Rd: buildIonTree.Rd:20-26: Dropping empty section \value
prepare_Rd: buildIonTree.Rd:27-29: Dropping empty section \references
prepare_Rd: buildIonTree.Rd:37-39: Dropping empty section \seealso
prepare_Rd: createDB.Rd:19-20: Dropping empty section \details
prepare_Rd: createDB.Rd:30-32: Dropping empty section \note
prepare_Rd: createDB.Rd:24-26: Dropping empty section \references
prepare_Rd: createDB.Rd:34-36: Dropping empty section \seealso
prepare_Rd: distMS2.Rd:18-19: Dropping empty section \details
prepare_Rd: distMS2.Rd:20-22: Dropping empty section \value
prepare_Rd: distMS2.Rd:29-31: Dropping empty section \note
prepare_Rd: distMS2.Rd:32-34: Dropping empty section \seealso
prepare_Rd: distMS2.Rd:35-36: Dropping empty section \examples
prepare_Rd: formatSpec.Rd:18-19: Dropping empty section \details
prepare_Rd: formatSpec.Rd:20-22: Dropping empty section \value
prepare_Rd: formatSpec.Rd:29-31: Dropping empty section \note
prepare_Rd: formatSpec.Rd:23-25: Dropping empty section \references
prepare_Rd: formatSpec.Rd:35-37: Dropping empty section \seealso
prepare_Rd: getMSnRaw.Rd:22-23: Dropping empty section \details
prepare_Rd: getMSnRaw.Rd:29-31: Dropping empty section \references
prepare_Rd: getMSnRaw.Rd:39-41: Dropping empty section \seealso
prepare_Rd: getMSnRaw.Rd:42-43: Dropping empty section \examples
prepare_Rd: getMetaInfo.Rd:17-18: Dropping empty section \details
prepare_Rd: getMetaInfo.Rd:19-25: Dropping empty section \value
prepare_Rd: getMetaInfo.Rd:32-34: Dropping empty section \note
prepare_Rd: getMetaInfo.Rd:26-28: Dropping empty section \references
prepare_Rd: getMetaInfo.Rd:36-38: Dropping empty section \seealso
prepare_Rd: getMetaInfo.Rd:39-40: Dropping empty section \examples
prepare_Rd: hasMS2.Rd:18-19: Dropping empty section \details
prepare_Rd: hasMS2.Rd:28-29: Dropping empty section \note
prepare_Rd: hasMS2.Rd:23-24: Dropping empty section \references
prepare_Rd: hasMS2.Rd:31-32: Dropping empty section \seealso
prepare_Rd: hasMS2.Rd:33-34: Dropping empty section \examples
prepare_Rd: iontree-class.Rd:30-32: Dropping empty section \references
prepare_Rd: iontree-class.Rd:40-41: Dropping empty section \seealso
prepare_Rd: iontree-package.Rd:32-33: Dropping empty section \seealso
prepare_Rd: iontree-package.Rd:34-35: Dropping empty section \examples
prepare_Rd: metaDataImport.Rd:17-19: Dropping empty section \details
prepare_Rd: metaDataImport.Rd:20-21: Dropping empty section \value
prepare_Rd: metaDataImport.Rd:22-24: Dropping empty section \references
prepare_Rd: metaDataImport.Rd:32-34: Dropping empty section \seealso
prepare_Rd: mzImport.Rd:18-19: Dropping empty section \details
prepare_Rd: mzImport.Rd:20-22: Dropping empty section \value
prepare_Rd: mzImport.Rd:23-25: Dropping empty section \references
prepare_Rd: mzImport.Rd:33-35: Dropping empty section \seealso
prepare_Rd: plotSpectrum.Rd:26-28: Dropping empty section \details
prepare_Rd: plotSpectrum.Rd:29-35: Dropping empty section \value
prepare_Rd: plotSpectrum.Rd:42-43: Dropping empty section \note
prepare_Rd: plotSpectrum.Rd:36-38: Dropping empty section \references
prepare_Rd: plotSpectrum.Rd:45-47: Dropping empty section \seealso
prepare_Rd: plotSpectrum.Rd:48-49: Dropping empty section \examples
prepare_Rd: rs2iontree.Rd:16-17: Dropping empty section \details
prepare_Rd: rs2iontree.Rd:27-28: Dropping empty section \note
prepare_Rd: rs2iontree.Rd:21-23: Dropping empty section \references
prepare_Rd: rs2iontree.Rd:30-31: Dropping empty section \seealso
prepare_Rd: rs2iontree.Rd:33-34: Dropping empty section \examples
prepare_Rd: saveMSnRaw.Rd:17-19: Dropping empty section \details
prepare_Rd: saveMSnRaw.Rd:20-26: Dropping empty section \value
prepare_Rd: saveMSnRaw.Rd:33-35: Dropping empty section \note
prepare_Rd: saveMSnRaw.Rd:27-29: Dropping empty section \references
prepare_Rd: saveMSnRaw.Rd:36-38: Dropping empty section \seealso
prepare_Rd: searchMS2.Rd:23-25: Dropping empty section \details
prepare_Rd: searchMS2.Rd:35-36: Dropping empty section \note
prepare_Rd: searchMS2.Rd:29-31: Dropping empty section \references
prepare_Rd: searchMS2.Rd:38-40: Dropping empty section \seealso
prepare_Rd: searchMS2.Rd:41-42: Dropping empty section \examples
prepare_Rd: topIons.Rd:17-19: Dropping empty section \details
prepare_Rd: topIons.Rd:29-31: Dropping empty section \note
prepare_Rd: topIons.Rd:23-25: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'D:/biocbld/bbs-2.11-bioc/meat/iontree.Rcheck/00check.log'
for details.

iontree.Rcheck/00install.out:


install for i386

* installing *source* package 'iontree' ...
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'plot' from package 'graphics' in package 'iontree'
** help
*** installing help indices
** building package indices
** installing vignettes
   'iontree_doc.Rnw' 
** testing if installed package can be loaded

install for x64

* installing *source* package 'iontree' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'iontree' as iontree_1.4.0.zip

* DONE (iontree)