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Package 302/609HostnameOS / ArchBUILDCHECKBUILD BIN
iBBiG 1.2.0
Aedin Culhane
Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/iBBiG
Last Changed Rev: 70050 / Revision: 74773
Last Changed Date: 2012-10-01 15:16:24 -0700 (Mon, 01 Oct 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]

Summary

Package: iBBiG
Version: 1.2.0
Command: rm -rf iBBiG.buildbin-libdir && mkdir iBBiG.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh iBBiG_1.2.0.tar.gz /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R iBBiG.buildbin-libdir
StartedAt: 2013-03-25 01:55:54 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 01:55:59 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 5.2 seconds
RetCode: 0
Status:  OK 
PackageFile: iBBiG_1.2.0.tgz
PackageFileSize: 999.6 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=iBBiG.buildbin-libdir iBBiG_1.2.0.tar.gz'
>>>>>>> 

* installing *source* package 'iBBiG' ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic  -c R_init_iBBiG.c -o R_init_iBBiG.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic  -c iBBiG.c -o iBBiG.o
iBBiG.c: In function 'clusterCovsC':
iBBiG.c:300: warning: implicit declaration of function 'time'
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o iBBiG.so R_init_iBBiG.o iBBiG.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/iBBiG.buildbin-libdir/iBBiG/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'tutorial.Rnw' 
** testing if installed package can be loaded

* DONE (iBBiG)


>>>>>>> 
>>>>>>> FIXING LINKS FOR iBBiG.buildbin-libdir/iBBiG/libs/i386/iBBiG.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "iBBiG.buildbin-libdir/iBBiG/libs/i386/iBBiG.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "iBBiG.buildbin-libdir/iBBiG/libs/i386/iBBiG.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "iBBiG.buildbin-libdir/iBBiG/libs/i386/iBBiG.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "iBBiG.buildbin-libdir/iBBiG/libs/i386/iBBiG.so"


>>>>>>> 
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=iBBiG.buildbin-libdir --libs-only iBBiG_1.2.0.tar.gz'
>>>>>>> 

* installing *source* package 'iBBiG' ...
** libs
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic  -c R_init_iBBiG.c -o R_init_iBBiG.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic  -c iBBiG.c -o iBBiG.o
iBBiG.c: In function 'clusterCovsC':
iBBiG.c:300: warning: implicit declaration of function 'time'
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o iBBiG.so R_init_iBBiG.o iBBiG.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/iBBiG.buildbin-libdir/iBBiG/libs/x86_64

* DONE (iBBiG)


>>>>>>> 
>>>>>>> FIXING LINKS FOR iBBiG.buildbin-libdir/iBBiG/libs/x86_64/iBBiG.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "iBBiG.buildbin-libdir/iBBiG/libs/x86_64/iBBiG.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "iBBiG.buildbin-libdir/iBBiG/libs/x86_64/iBBiG.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "iBBiG.buildbin-libdir/iBBiG/libs/x86_64/iBBiG.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "iBBiG.buildbin-libdir/iBBiG/libs/x86_64/iBBiG.so"