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Package 215/565HostnameOS / ArchBUILDCHECKBUILD BIN
genefilter 1.39.0
Bioconductor Package Maintainer
Snapshot Date: 2012-06-20 15:22:40 -0700 (Wed, 20 Jun 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/genefilter
Last Changed Rev: 64680 / Revision: 66885
Last Changed Date: 2012-03-30 15:15:56 -0700 (Fri, 30 Mar 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]
perceval Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: genefilter
Version: 1.39.0
Command: rm -rf genefilter.buildbin-libdir && mkdir genefilter.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh genefilter_1.39.0.tar.gz /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R genefilter.buildbin-libdir
StartedAt: 2012-06-21 04:50:40 -0700 (Thu, 21 Jun 2012)
EndedAt: 2012-06-21 04:51:12 -0700 (Thu, 21 Jun 2012)
EllapsedTime: 31.6 seconds
RetCode: 0
Status:  OK 
PackageFile: genefilter_1.39.0.tgz
PackageFileSize: 824.9 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=genefilter.buildbin-libdir genefilter_1.39.0.tar.gz'
>>>>>>> 

* installing *source* package 'genefilter' ...
** libs
*** arch - i386
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks  -c half_range_mode.cpp -o half_range_mode.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic  -c init.c -o init.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic  -c nd.c -o nd.o
nd.c: In function 'gf_dist_binary':
nd.c:242: warning: unused variable 'w2'
nd.c:242: warning: unused variable 'w1'
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic  -c pAUC.c -o pAUC.o
pAUC.c: In function 'pAUC_c':
pAUC.c:73: warning: operation on 'ta' may be undefined
pAUC.c:76: warning: operation on 'ta' may be undefined
pAUC.c:79: warning: operation on 'ta' may be undefined
pAUC.c: In function 'pAUC':
pAUC.c:141: warning: suggest parentheses around comparison in operand of |
pAUC.c:123: warning: unused variable 'i'
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic  -c rowPAUCs.c -o rowPAUCs.o
rowPAUCs.c: In function 'ROCpAUC_c':
rowPAUCs.c:97: warning: operation on 'ta' may be undefined
rowPAUCs.c:100: warning: operation on 'ta' may be undefined
rowPAUCs.c:103: warning: operation on 'ta' may be undefined
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic  -c rowttests.c -o rowttests.o
gfortran -arch i386   -fPIC  -g -O2 -Wall -pedantic  -c ttest.f -o ttest.o
g++ -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o genefilter.so half_range_mode.o init.o nd.o pAUC.o rowPAUCs.o rowttests.o ttest.o -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/genefilter.buildbin-libdir/genefilter/libs/i386
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Creating a generic function for 'plot' from package 'graphics' in package 'genefilter'
** help
*** installing help indices
** building package indices
** installing vignettes
   'howtogenefilter.Rnw' 
   'howtogenefinder.Rnw' 
   'independent_filtering_plots.Rnw' 
** testing if installed package can be loaded

* DONE (genefilter)


>>>>>>> 
>>>>>>> FIXING LINKS FOR genefilter.buildbin-libdir/genefilter/libs/i386/genefilter.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "genefilter.buildbin-libdir/genefilter/libs/i386/genefilter.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "genefilter.buildbin-libdir/genefilter/libs/i386/genefilter.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "genefilter.buildbin-libdir/genefilter/libs/i386/genefilter.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "genefilter.buildbin-libdir/genefilter/libs/i386/genefilter.so"


>>>>>>> 
>>>>>>> INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --preclean --no-multiarch --no-test-load --library=genefilter.buildbin-libdir --libs-only genefilter_1.39.0.tar.gz'
>>>>>>> 

* installing *source* package 'genefilter' ...
** libs
*** arch - ppc
g++ -arch ppc -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/ppc -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2  -c half_range_mode.cpp -o half_range_mode.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/ppc -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2  -c init.c -o init.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/ppc -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2  -c nd.c -o nd.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/ppc -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2  -c pAUC.c -o pAUC.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/ppc -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2  -c rowPAUCs.c -o rowPAUCs.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/ppc -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2  -c rowttests.c -o rowttests.o
gfortran -arch ppc   -fPIC  -g -O2  -c ttest.f -o ttest.o
g++ -arch ppc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o genefilter.so half_range_mode.o init.o nd.o pAUC.o rowPAUCs.o rowttests.o ttest.o -lgfortran -lSystemStubs -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/genefilter.buildbin-libdir/genefilter/libs/ppc

* DONE (genefilter)


>>>>>>> 
>>>>>>> FIXING LINKS FOR genefilter.buildbin-libdir/genefilter/libs/ppc/genefilter.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "genefilter.buildbin-libdir/genefilter/libs/ppc/genefilter.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "genefilter.buildbin-libdir/genefilter/libs/ppc/genefilter.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "genefilter.buildbin-libdir/genefilter/libs/ppc/genefilter.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "genefilter.buildbin-libdir/genefilter/libs/ppc/genefilter.so"


>>>>>>> 
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=genefilter.buildbin-libdir --libs-only genefilter_1.39.0.tar.gz'
>>>>>>> 

* installing *source* package 'genefilter' ...
** libs
*** arch - x86_64
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2  -c half_range_mode.cpp -o half_range_mode.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2  -c init.c -o init.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2  -c nd.c -o nd.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2  -c pAUC.c -o pAUC.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2  -c rowPAUCs.c -o rowPAUCs.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2  -c rowttests.c -o rowttests.o
gfortran -arch x86_64   -fPIC  -g -O2  -c ttest.f -o ttest.o
g++ -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o genefilter.so half_range_mode.o init.o nd.o pAUC.o rowPAUCs.o rowttests.o ttest.o -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/genefilter.buildbin-libdir/genefilter/libs/x86_64

* DONE (genefilter)


>>>>>>> 
>>>>>>> FIXING LINKS FOR genefilter.buildbin-libdir/genefilter/libs/x86_64/genefilter.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "genefilter.buildbin-libdir/genefilter/libs/x86_64/genefilter.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "genefilter.buildbin-libdir/genefilter/libs/x86_64/genefilter.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "genefilter.buildbin-libdir/genefilter/libs/x86_64/genefilter.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "genefilter.buildbin-libdir/genefilter/libs/x86_64/genefilter.so"