Package: flowQ

Version: 1.18.0

Command: rm -rf flowQ.buildbin-libdir && mkdir flowQ.buildbin-libdir && D:\biocbld\bbs-2.11-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=flowQ.buildbin-libdir flowQ_1.18.0.tar.gz >flowQ-install.out 2>&1 && D:\biocbld\bbs-2.11-bioc\R\bin\R.exe CMD check --library=flowQ.buildbin-libdir --install="check:flowQ-install.out" --force-multiarch --no-vignettes --timings flowQ_1.18.0.tar.gz && mv flowQ.buildbin-libdir/* flowQ.Rcheck/ && rmdir flowQ.buildbin-libdir

StartedAt: 2013-03-25 00:56:49 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 01:03:09 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 380.0 seconds

RetCode: 0

Status:  OK

CheckDir: flowQ.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.11-bioc/meat/flowQ.Rcheck'
* using R version 2.15.3 (2013-03-01)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowQ/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowQ' version '1.18.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'flowQ' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
evaluateProcess: multiple local function definitions for 'efun' with
  different formal arguments
* checking Rd files ... NOTE
prepare_Rd: normalizeSets.Rd:44-51: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... NOTE
The following directories should probably not be installed:
  'images'

Consider the use of a .Rinstignore file: see 'Writing R Extensions',
or move the vignette sources from 'inst/doc' to 'vignettes'.
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                       user system elapsed
qaProcess.ECDFPlot     6.86   0.05   12.54
qaProcess.KLDistPlot   5.76   0.13   12.95
qaProcess.DensityPlot  5.57   0.04   11.90
qaProcess.2DStatsPlot  5.51   0.03   11.67
qaProcess.BoundaryPlot 3.20   0.08    9.00
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                       user system elapsed
qaProcess.ECDFPlot     8.29   0.13   14.39
qaProcess.DensityPlot  7.68   0.06   13.34
qaProcess.2DStatsPlot  7.01   0.10   13.69
qaProcess.KLDistPlot   6.25   0.15   12.88
qaProcess.BoundaryPlot 4.33   0.06   11.37
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 3 notes.
See
  'D:/biocbld/bbs-2.11-bioc/meat/flowQ.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'flowQ' ...
** R
** data
** inst
** preparing package for lazy loading
Warning: replacing previous import 'plot' when loading 'graphics'
Warning: replacing previous import 'as' when loading 'methods'
** help
*** installing help indices
** building package indices
** installing vignettes
   'DataQualityAssessment.Rnw' 
   'Extending-flowQ.Rnw' 
** testing if installed package can be loaded
Warning: replacing previous import 'plot' when loading 'graphics'
Warning: replacing previous import 'as' when loading 'methods'

install for x64

* installing *source* package 'flowQ' ...
** testing if installed package can be loaded
Warning: replacing previous import 'plot' when loading 'graphics'
Warning: replacing previous import 'as' when loading 'methods'
* MD5 sums
packaged installation of 'flowQ' as flowQ_1.18.0.zip

* DONE (flowQ)