Package: flowPlots

Version: 1.6.0

Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch flowPlots_1.6.0.tar.gz

StartedAt: 2013-03-24 23:29:22 -0700 (Sun, 24 Mar 2013)

EndedAt: 2013-03-24 23:30:08 -0700 (Sun, 24 Mar 2013)

EllapsedTime: 46.2 seconds

RetCode: 0

Status:  OK

CheckDir: flowPlots.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.11-bioc/meat/flowPlots.Rcheck'
* using R version 2.15.3 (2013-03-01)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'flowPlots/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowPlots' version '1.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'flowPlots' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                   user system elapsed
StackedData-class 8.472  0.166   8.949
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'flowPlots' ...
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'flowPlots.Rnw' 
** testing if installed package can be loaded

* DONE (flowPlots)

name	user	system	elapsed
GroupListBoxplot	0.168	0.012	0.208
StackedData-class	8.472	0.166	8.949
adultsNeonates	0.002	0.000	0.002
computeMarginalData-methods	1.988	0.042	2.071
computeMarkers-methods	0.000	0.000	0.001
computePFDData-methods	1.727	0.039	1.778
computePFDGroupStatsList	0.323	0.046	0.453
computePFDPartsData-methods	2.427	0.048	2.505
computeProfileData-methods	2.282	0.051	2.359
legendPFDStatsGroupNames	0.146	0.012	0.160
makeBarplotData	0.014	0.002	0.016
makeDataList	0.051	0.002	0.054
makeTernaryData	0.131	0.011	0.143
marginalDF	0.001	0.000	0.001
marginalData-methods	0.002	0.001	0.002
markerMatrix	0.000	0.000	0.001
markers-methods	0.001	0.001	0.002
pfdDF	0.001	0.000	0.001
pfdData-methods	0.002	0.001	0.002
pfdPartsData-methods	0.003	0.001	0.004
pfdPartsList	0.001	0.000	0.001
profileDF	0.001	0.001	0.001
profileData-methods	0.003	0.001	0.004
readStackedData-methods	0.043	0.005	0.048
stackedData-methods	0.068	0.016	0.087