fabia 2.3.0
Sepp Hochreiter
| Snapshot Date: 2012-06-20 15:22:40 -0700 (Wed, 20 Jun 2012) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/fabia | | Last Changed Rev: 66730 / Revision: 66885 | | Last Changed Date: 2012-06-14 05:57:19 -0700 (Thu, 14 Jun 2012) |
| lamb1 | Linux (openSUSE 12.1) / x86_64 | OK | OK | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Leopard (10.5.8) / i386 | OK | OK | [ OK ] |
| perceval | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=fabia.buildbin-libdir fabia_2.3.0.tar.gz'
>>>>>>>
* installing *source* package 'fabia' ...
checking for gcc... gcc -arch i386 -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -arch i386 -std=gnu99 accepts -g... yes
checking for gcc -arch i386 -std=gnu99 option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -arch i386 -std=gnu99 -E
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG -I/usr/local/include -I/usr/local/include -g -O2 -Wall -pedantic -fPIC -g -O2 -Wall -pedantic -c fabiac.c -o fabiac.o
fabiac.c: In function 'spfabic':
fabiac.c:1528: warning: ordered comparison of pointer with integer zero
fabiac.c: In function 'samplesPerFeature':
fabiac.c:3026: warning: ordered comparison of pointer with integer zero
fabiac.c: In function 'readSamplesSpfabic':
fabiac.c:3260: warning: ordered comparison of pointer with integer zero
fabiac.c: In function 'readSpfabicResult':
fabiac.c:3480: warning: ordered comparison of pointer with integer zero
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o fabia.so fabiac.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/fabia.buildbin-libdir/fabia/libs/i386
** R
** demo
** inst
** preparing package for lazy loading
Creating a generic function for 'plot' from package 'graphics' in package 'fabia'
** help
*** installing help indices
** building package indices
** installing vignettes
'fabia.Rnw'
** testing if installed package can be loaded
* DONE (fabia)
>>>>>>>
>>>>>>> FIXING LINKS FOR fabia.buildbin-libdir/fabia/libs/i386/fabia.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "fabia.buildbin-libdir/fabia/libs/i386/fabia.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "fabia.buildbin-libdir/fabia/libs/i386/fabia.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "fabia.buildbin-libdir/fabia/libs/i386/fabia.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "fabia.buildbin-libdir/fabia/libs/i386/fabia.so"
>>>>>>>
>>>>>>> INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --preclean --no-multiarch --no-test-load --library=fabia.buildbin-libdir --libs-only fabia_2.3.0.tar.gz'
>>>>>>>
* installing *source* package 'fabia' ...
checking for gcc... gcc -arch ppc -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -arch ppc -std=gnu99 accepts -g... yes
checking for gcc -arch ppc -std=gnu99 option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -arch ppc -std=gnu99 -E
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - ppc
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/ppc -DNDEBUG -I/usr/local/include -I/usr/local/include -g -O2 -fPIC -g -O2 -c fabiac.c -o fabiac.o
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o fabia.so fabiac.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/fabia.buildbin-libdir/fabia/libs/ppc
* DONE (fabia)
>>>>>>>
>>>>>>> FIXING LINKS FOR fabia.buildbin-libdir/fabia/libs/ppc/fabia.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "fabia.buildbin-libdir/fabia/libs/ppc/fabia.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "fabia.buildbin-libdir/fabia/libs/ppc/fabia.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "fabia.buildbin-libdir/fabia/libs/ppc/fabia.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "fabia.buildbin-libdir/fabia/libs/ppc/fabia.so"
>>>>>>>
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=fabia.buildbin-libdir --libs-only fabia_2.3.0.tar.gz'
>>>>>>>
* installing *source* package 'fabia' ...
checking for gcc... gcc -arch x86_64 -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -arch x86_64 -std=gnu99 accepts -g... yes
checking for gcc -arch x86_64 -std=gnu99 option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -arch x86_64 -std=gnu99 -E
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG -I/usr/local/include -I/usr/local/include -g -O2 -fPIC -g -O2 -c fabiac.c -o fabiac.o
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o fabia.so fabiac.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/fabia.buildbin-libdir/fabia/libs/x86_64
* DONE (fabia)
>>>>>>>
>>>>>>> FIXING LINKS FOR fabia.buildbin-libdir/fabia/libs/x86_64/fabia.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "fabia.buildbin-libdir/fabia/libs/x86_64/fabia.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "fabia.buildbin-libdir/fabia/libs/x86_64/fabia.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "fabia.buildbin-libdir/fabia/libs/x86_64/fabia.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "fabia.buildbin-libdir/fabia/libs/x86_64/fabia.so"