externalVector 1.24.0
Bioconductor Package Maintainer
| Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/externalVector | | Last Changed Rev: 70050 / Revision: 74773 | | Last Changed Date: 2012-10-01 15:16:24 -0700 (Mon, 01 Oct 2012) |
| lamb1 | Linux (openSUSE 12.1) / x86_64 | OK | OK | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| perceval | Mac OS X Leopard (10.5.8) / i386 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=externalVector.buildbin-libdir externalVector_1.24.0.tar.gz'
>>>>>>>
* installing *source* package 'externalVector' ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c allocator.c -o allocator.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c arraySummary.c -o arraySummary.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c coerce.c -o coerce.o
coerce.c: In function 'ComplexFromString':
coerce.c:213: warning: initialization from incompatible pointer type
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c externalVector.c -o externalVector.o
externalVector.c:7: warning: 'ScalarVector' defined but not used
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c groups.c -o groups.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c math.c -o math.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c slice.c -o slice.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c storage.c -o storage.o
storage.c: In function 'createNativeStorageMethods':
storage.c:2627: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2633: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2639: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2643: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2648: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2652: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2657: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2662: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2672: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2677: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2681: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2685: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2690: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2695: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2705: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2709: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2713: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2717: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2722: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2727: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2737: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2741: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2745: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2749: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2753: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2757: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2769: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2775: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2781: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2787: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2793: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2799: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2811: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2817: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2823: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2829: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2835: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2841: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2853: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2859: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2865: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2871: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2877: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2883: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2894: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2899: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2904: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2909: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2914: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2919: warning: ISO C forbids conversion of object pointer to function pointer type
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c subscript.c -o subscript.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o externalVector.so allocator.o arraySummary.o coerce.o externalVector.o groups.o math.o slice.o storage.o subscript.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/externalVector.buildbin-libdir/externalVector/libs/i386
** R
** preparing package for lazy loading
Creating a generic function for 'match' from package 'base' in package 'externalVector'
Creating a generic function for 'as.vector' from package 'base' in package 'externalVector'
Creating a generic function for 'as.single' from package 'base' in package 'externalVector'
Creating a generic function for 'as.list' from package 'base' in package 'externalVector'
Creating a generic function for 'as.matrix' from package 'base' in package 'externalVector'
Creating a generic function for 'as.data.frame' from package 'base' in package 'externalVector'
Creating a generic function for 'colSums' from package 'base' in package 'externalVector'
Creating a generic function for 'colMeans' from package 'base' in package 'externalVector'
Creating a generic function for 'rowSums' from package 'base' in package 'externalVector'
Creating a generic function for 'rowMeans' from package 'base' in package 'externalVector'
Creating a generic function for 'apply' from package 'base' in package 'externalVector'
Creating a generic function for 'lapply' from package 'base' in package 'externalVector'
Creating a generic function for 'sapply' from package 'base' in package 'externalVector'
Creating a generic function for 'mean' from package 'base' in package 'externalVector'
Creating a generic function for 'median' from package 'stats' in package 'externalVector'
Creating a new generic function for 'var' in package 'externalVector'
Creating a new generic function for 'cov' in package 'externalVector'
Creating a new generic function for 'cor' in package 'externalVector'
Creating a generic function for 'cov2cor' from package 'stats' in package 'externalVector'
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (externalVector)
>>>>>>>
>>>>>>> FIXING LINKS FOR externalVector.buildbin-libdir/externalVector/libs/i386/externalVector.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "externalVector.buildbin-libdir/externalVector/libs/i386/externalVector.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "externalVector.buildbin-libdir/externalVector/libs/i386/externalVector.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "externalVector.buildbin-libdir/externalVector/libs/i386/externalVector.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "externalVector.buildbin-libdir/externalVector/libs/i386/externalVector.so"
>>>>>>>
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=externalVector.buildbin-libdir --libs-only externalVector_1.24.0.tar.gz'
>>>>>>>
* installing *source* package 'externalVector' ...
** libs
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c allocator.c -o allocator.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c arraySummary.c -o arraySummary.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c coerce.c -o coerce.o
coerce.c: In function 'ComplexFromString':
coerce.c:213: warning: initialization from incompatible pointer type
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c externalVector.c -o externalVector.o
externalVector.c:7: warning: 'ScalarVector' defined but not used
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c groups.c -o groups.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c math.c -o math.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c slice.c -o slice.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c storage.c -o storage.o
storage.c: In function 'createNativeStorageMethods':
storage.c:2627: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2633: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2639: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2643: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2648: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2652: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2657: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2662: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2672: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2677: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2681: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2685: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2690: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2695: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2705: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2709: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2713: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2717: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2722: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2727: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2737: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2741: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2745: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2749: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2753: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2757: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2769: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2775: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2781: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2787: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2793: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2799: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2811: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2817: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2823: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2829: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2835: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2841: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2853: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2859: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2865: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2871: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2877: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2883: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2894: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2899: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2904: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2909: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2914: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2919: warning: ISO C forbids conversion of object pointer to function pointer type
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c subscript.c -o subscript.o
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o externalVector.so allocator.o arraySummary.o coerce.o externalVector.o groups.o math.o slice.o storage.o subscript.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/externalVector.buildbin-libdir/externalVector/libs/x86_64
* DONE (externalVector)
>>>>>>>
>>>>>>> FIXING LINKS FOR externalVector.buildbin-libdir/externalVector/libs/x86_64/externalVector.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "externalVector.buildbin-libdir/externalVector/libs/x86_64/externalVector.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "externalVector.buildbin-libdir/externalVector/libs/x86_64/externalVector.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "externalVector.buildbin-libdir/externalVector/libs/x86_64/externalVector.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "externalVector.buildbin-libdir/externalVector/libs/x86_64/externalVector.so"