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Package 175/565HostnameOS / ArchBUILDCHECKBUILD BIN
exomeCopy 1.3.1
Michael Love
Snapshot Date: 2012-06-20 15:22:40 -0700 (Wed, 20 Jun 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/exomeCopy
Last Changed Rev: 65745 / Revision: 66885
Last Changed Date: 2012-05-07 05:59:06 -0700 (Mon, 07 May 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]
perceval Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: exomeCopy
Version: 1.3.1
Command: rm -rf exomeCopy.buildbin-libdir && mkdir exomeCopy.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh exomeCopy_1.3.1.tar.gz /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R exomeCopy.buildbin-libdir
StartedAt: 2012-06-21 04:46:25 -0700 (Thu, 21 Jun 2012)
EndedAt: 2012-06-21 04:46:51 -0700 (Thu, 21 Jun 2012)
EllapsedTime: 26.5 seconds
RetCode: 0
Status:  OK 
PackageFile: exomeCopy_1.3.1.tgz
PackageFileSize: 501.6 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=exomeCopy.buildbin-libdir exomeCopy_1.3.1.tar.gz'
>>>>>>> 

* installing *source* package 'exomeCopy' ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic  -c exomeCopy.c -o exomeCopy.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o exomeCopy.so exomeCopy.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/exomeCopy.buildbin-libdir/exomeCopy/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'exomeCopy.Rnw' 
** testing if installed package can be loaded

* DONE (exomeCopy)


>>>>>>> 
>>>>>>> FIXING LINKS FOR exomeCopy.buildbin-libdir/exomeCopy/libs/i386/exomeCopy.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "exomeCopy.buildbin-libdir/exomeCopy/libs/i386/exomeCopy.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "exomeCopy.buildbin-libdir/exomeCopy/libs/i386/exomeCopy.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "exomeCopy.buildbin-libdir/exomeCopy/libs/i386/exomeCopy.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "exomeCopy.buildbin-libdir/exomeCopy/libs/i386/exomeCopy.so"


>>>>>>> 
>>>>>>> INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --preclean --no-multiarch --no-test-load --library=exomeCopy.buildbin-libdir --libs-only exomeCopy_1.3.1.tar.gz'
>>>>>>> 

* installing *source* package 'exomeCopy' ...
** libs
*** arch - ppc
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/ppc -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2  -c exomeCopy.c -o exomeCopy.o
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o exomeCopy.so exomeCopy.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/exomeCopy.buildbin-libdir/exomeCopy/libs/ppc

* DONE (exomeCopy)


>>>>>>> 
>>>>>>> FIXING LINKS FOR exomeCopy.buildbin-libdir/exomeCopy/libs/ppc/exomeCopy.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "exomeCopy.buildbin-libdir/exomeCopy/libs/ppc/exomeCopy.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "exomeCopy.buildbin-libdir/exomeCopy/libs/ppc/exomeCopy.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "exomeCopy.buildbin-libdir/exomeCopy/libs/ppc/exomeCopy.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "exomeCopy.buildbin-libdir/exomeCopy/libs/ppc/exomeCopy.so"


>>>>>>> 
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=exomeCopy.buildbin-libdir --libs-only exomeCopy_1.3.1.tar.gz'
>>>>>>> 

* installing *source* package 'exomeCopy' ...
** libs
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2  -c exomeCopy.c -o exomeCopy.o
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o exomeCopy.so exomeCopy.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/exomeCopy.buildbin-libdir/exomeCopy/libs/x86_64

* DONE (exomeCopy)


>>>>>>> 
>>>>>>> FIXING LINKS FOR exomeCopy.buildbin-libdir/exomeCopy/libs/x86_64/exomeCopy.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "exomeCopy.buildbin-libdir/exomeCopy/libs/x86_64/exomeCopy.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "exomeCopy.buildbin-libdir/exomeCopy/libs/x86_64/exomeCopy.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "exomeCopy.buildbin-libdir/exomeCopy/libs/x86_64/exomeCopy.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "exomeCopy.buildbin-libdir/exomeCopy/libs/x86_64/exomeCopy.so"