Package: ReQON

Version: 1.3.2

Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ReQON

StartedAt: 2012-06-20 20:28:04 -0700 (Wed, 20 Jun 2012)

EndedAt: 2012-06-20 20:28:32 -0700 (Wed, 20 Jun 2012)

EllapsedTime: 28.8 seconds

RetCode: 1

Status:  ERROR

PackageFile: None

PackageFileSize: NA

* checking for file 'ReQON/DESCRIPTION' ... OK
* preparing 'ReQON':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: Rsamtools
Loading required package: IRanges
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following object(s) are masked from 'package:stats':

    xtabs

The following object(s) are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, cbind,
    colnames, duplicated, eval, get, intersect, lapply, mapply, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rbind, rep.int,
    rownames, sapply, setdiff, table, tapply, union, unique

Loading required package: GenomicRanges
Loading required package: Biostrings
Loading required package: seqbias

Start time: Wed Jun 20 20:28:31 2012


Reading in bam file

Error: processing vignette 'ReQON.Rnw' failed with diagnostics:
 chunk 3 
Error in .jnew("org/renci/sequencing/util/BAMUnpacker") : 
  java.lang.UnsupportedClassVersionError: Bad version number in .class file
Execution halted