Package: Rcade

Version: 1.0.0

Command: rm -rf Rcade.buildbin-libdir && mkdir Rcade.buildbin-libdir && D:\biocbld\bbs-2.11-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Rcade.buildbin-libdir Rcade_1.0.0.tar.gz >Rcade-install.out 2>&1 && D:\biocbld\bbs-2.11-bioc\R\bin\R.exe CMD check --library=Rcade.buildbin-libdir --install="check:Rcade-install.out" --force-multiarch --no-vignettes --timings Rcade_1.0.0.tar.gz && mv Rcade.buildbin-libdir/* Rcade.Rcheck/ && rmdir Rcade.buildbin-libdir

StartedAt: 2013-03-25 02:44:59 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 02:48:26 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 207.0 seconds

RetCode: 0

Status:  OK

CheckDir: Rcade.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.11-bioc/meat/Rcade.Rcheck'
* using R version 2.15.3 (2013-03-01)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Rcade/DESCRIPTION' ... OK
* this is package 'Rcade' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'Rcade' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.6Mb
  sub-directories of 1Mb or more:
    extdata   5.2Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: constructRcadeTable.Rd:43-45: Dropping empty section \details
prepare_Rd: constructRcadeTable.Rd:46-52: Dropping empty section \value
prepare_Rd: constructRcadeTable.Rd:59-61: Dropping empty section \note
prepare_Rd: constructRcadeTable.Rd:56-58: Dropping empty section \author
prepare_Rd: constructRcadeTable.Rd:53-55: Dropping empty section \references
prepare_Rd: diffCountsBaySeq.Rd:58-60: Dropping empty section \note
prepare_Rd: diffCountsBaySeq.Rd:54-56: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
RcadeAnalysis    8.76      0    8.77
diffCountsBaySeq 8.25      0    8.27
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
RcadeAnalysis    10.70   0.02   10.72
diffCountsBaySeq 10.06   0.03   10.09
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386'
  Running 'runTests.R'
 OK
** running tests for arch 'x64'
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  'D:/biocbld/bbs-2.11-bioc/meat/Rcade.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'Rcade' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'Rcade.Rnw' 
** testing if installed package can be loaded

install for x64

* installing *source* package 'Rcade' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Rcade' as Rcade_1.0.0.zip

* DONE (Rcade)