RMassBank 1.0.0
Michael Stravs, Emma Schymanski
| Snapshot Date: 2013-03-23 16:21:15 -0700 (Sat, 23 Mar 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/RMassBank | | Last Changed Rev: 70050 / Revision: 74756 | | Last Changed Date: 2012-10-01 15:16:24 -0700 (Mon, 01 Oct 2012) |
| lamb1 | Linux (openSUSE 12.1) / x86_64 | OK | [ ERROR ] | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| perceval | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* using log directory ‘/loc/home/biocbuild/bbs-2.11-bioc/meat/RMassBank.Rcheck’
* using R version 2.15.3 (2013-03-01)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RMassBank/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RMassBank’ version ‘1.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘RMassBank’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... ERROR
Running examples in ‘RMassBank-Ex.R’ failed
The error most likely occurred in:
> assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: getCtsRecord
> ### Title: Retrieve information from CTS
> ### Aliases: getCtsRecord
>
> ### ** Examples
>
> getCtsRecord("benzene", "name")
<html>
<head>
<title>CTS: Chemical Translation Service</title>
<link rel="stylesheet" href="/cts/css/main.css"/>
<style type="text/css">@import url("/cts/css/pagination.css");</style>
<style type="text/css">@import url("/cts/css/font.css");</style>
<!--
<link rel="shortcut icon" href="/cts/images/favicon.ico" type="image/x-icon"/>
-->
<meta name="layout" content="main"/>
<script type="text/javascript" src="/cts/js/application.js"></script>
<script type="text/javascript" src="/cts/js/prototype/prototype.js"></script>
<meta name="layout" content="main"/>
</head>
<body class="BodyBackground">
<div id="spinner" class="spinner" style="display:none;">
<img src="/cts/images/spinner.gif" alt="Spinner"/>
</div>
<!-- testing for the browser and print an error message in case they use the internet explorer -->
<script type="text/javascript">
if (navigator.appName == 'Microsoft Internet Explorer') {
document.write('<div class=\"box\"><div class=\"errors-center\" >we recommend that you use Firefox, Safari or Google Chrome for the best expirience! Right now you are using the Microsoft Internet Eplorer and we do not actively support or recommend it!</div></div>');
}
</script>
<div id="main">
<div class="page_header">
Chemical Translation Service
</div>
<div class="box">
<h3><a href="/cts/homePage/index" class="home">Home</a></h3>
<div class="line"></div>
</div>
<div class="box">
<h3>Ooops, what did just happen?</h3>
<div class="line"></div>
<div class="message">
oh dear this is rather embarissing, but it looks like you discovered a bug. To help us avoiding this in the future, would you mind to send a bug report to <a href="mailto:wohlgemuth@ucdavis.edu">Gert Wohlgemuth</a> with as many informations as possible, so we can reproduce this and fix it!
</div>
<h3>Error Details</h3>
<div class="line"></div>
<div class="errors">
<strong>Error 500:</strong> Cannot load default configuration from jar<br/>
<strong>Servlet:</strong> default<br/>
<strong>URI:</strong> /cts/massLookup/masstransform<br/>
<strong>Exception Message:</strong> Cannot load default configuration from jar <br/>
<strong>Caused by:</strong> Cannot load default configuration from jar <br/>
<strong>Class:</strong> Unknown <br/>
<strong>At Line:</strong> [-1] <br/>
<strong>Code Snippet:</strong><br/>
<div class="snippet">
</div>
</div>
<h3>Stack Trace</h3>
<div class="line"></div>
<div class="errors">
<pre>java.lang.IllegalStateException: Cannot load default configuration from jar
<br/> at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.loadSitemeshXML(Grails5535Factory.java:146)
<br/> at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.loadConfig(Grails5535Factory.java:73)
<br/> at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.refresh(Grails5535Factory.java:272)
<br/> at com.opensymphony.module.sitemesh.Factory.getInstance(Factory.java:56)
<br/> at com.opensymphony.sitemesh.webapp.SiteMeshFilter.initContentProcessor(SiteMeshFilter.java:107)
<br/> at org.codehaus.groovy.grails.web.sitemesh.GrailsPageFilter.doFilter(GrailsPageFilter.java:114)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.codehaus.groovy.grails.web.servlet.mvc.GrailsWebRequestFilter.doFilterInternal(GrailsWebRequestFilter.java:69)
<br/> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.codehaus.groovy.grails.web.filters.HiddenHttpMethodFilter.doFilterInternal(HiddenHttpMethodFilter.java:69)
<br/> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:88)
<br/> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
<br/> at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:237)
<br/> at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:474)
<br/> at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:119)
<br/> at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:480)
<br/> at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:226)
<br/> at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:935)
<br/> at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:404)
<br/> at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:184)
<br/> at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:870)
<br/> at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:117)
<br/> at org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:247)
<br/> at org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:151)
<br/> at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116)
<br/> at org.eclipse.jetty.server.Server.handle(Server.java:346)
<br/> at org.eclipse.jetty.server.HttpConnection.handleRequest(HttpConnection.java:596)
<br/> at org.eclipse.jetty.server.HttpConnection$RequestHandler.headerComplete(HttpConnection.java:1051)
<br/> at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:592)
<br/> at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:214)
<br/> at org.eclipse.jetty.server.HttpConnection.handle(HttpConnection.java:426)
<br/> at org.eclipse.jetty.io.nio.SelectChannelEndPoint.handle(SelectChannelEndPoint.java:520)
<br/> at org.eclipse.jetty.io.nio.SelectChannelEndPoint$1.run(SelectChannelEndPoint.java:40)
<br/> at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:528)
<br/> at java.lang.Thread.run(Thread.java:619)
<br/></pre>
</div>
</div>
</div>
<div id="footer">
<!--
<style type="text/css">@import url("/cts/css/WebGUIStandards.css");</style>
<style type="text/css">@import url("/cts/css/FooterLayout.css");</style>
<div id="copy" align="center" valign="middle">
<div class="LabelFooter" align="center" valign="middle" style="padding:5px;">
<a class="Footer" href="http://binbase.fiehnlab.ucdavis.edu:8080/jira/secure/Dashboard.jspa">Report a problem</a>
| <a class="Footer" href="http://binbase.fiehnlab.ucdavis.edu:8080/jira/secure/Dashboard.jspa">Request a feature</a>
| <a class="Footer" href="http://binbase.fiehnlab.ucdavis.edu:8080/jira/secure/Administrators.jspa">Contact administrators</a>
</div>
<div class="LabelFooter" align="center" valign="middle">
Powered by a free Atlassian <a class="Footer" href='http://www.atlassian.com/software/jira'>JIRA</a> open source license
</div>
</div>
-->
<!-- google anlytics, do not change -->
<script type="text/javascript">
var gaJsHost = (("https:" == document.location.protocol) ? "https://ssl." : "http://www.");
document.write(unescape("%3Cscript src='" + gaJsHost + "google-analytics.com/ga.js' type='text/javascript'%3E%3C/script%3E"));
</script>
<script type="text/javascript">
try {
var pageTracker = _gat._getTracker("UA-2237528-17");
pageTracker._trackPageview();
}
catch (err) {
}
</script>
</div>
</body>
</html>:36: parser error : AttValue: " or ' expected
document.write('<div class=\"box\"><div class=\"errors-center\" >we recommen
^
<html>
<head>
<title>CTS: Chemical Translation Service</title>
<link rel="stylesheet" href="/cts/css/main.css"/>
<style type="text/css">@import url("/cts/css/pagination.css");</style>
<style type="text/css">@import url("/cts/css/font.css");</style>
<!--
<link rel="shortcut icon" href="/cts/images/favicon.ico" type="image/x-icon"/>
-->
<meta name="layout" content="main"/>
<script type="text/javascript" src="/cts/js/application.js"></script>
<script type="text/javascript" src="/cts/js/prototype/prototype.js"></script>
<meta name="layout" content="main"/>
</head>
<body class="BodyBackground">
<div id="spinner" class="spinner" style="display:none;">
<img src="/cts/images/spinner.gif" alt="Spinner"/>
</div>
<!-- testing for the browser and print an error message in case they use the internet explorer -->
<script type="text/javascript">
if (navigator.appName == 'Microsoft Internet Explorer') {
document.write('<div class=\"box\"><div class=\"errors-center\" >we recommend that you use Firefox, Safari or Google Chrome for the best expirience! Right now you are using the Microsoft Internet Eplorer and we do not actively support or recommend it!</div></div>');
}
</script>
<div id="main">
<div class="page_header">
Chemical Translation Service
</div>
<div class="box">
<h3><a href="/cts/homePage/index" class="home">Home</a></h3>
<div class="line"></div>
</div>
<div class="box">
<h3>Ooops, what did just happen?</h3>
<div class="line"></div>
<div class="message">
oh dear this is rather embarissing, but it looks like you discovered a bug. To help us avoiding this in the future, would you mind to send a bug report to <a href="mailto:wohlgemuth@ucdavis.edu">Gert Wohlgemuth</a> with as many informations as possible, so we can reproduce this and fix it!
</div>
<h3>Error Details</h3>
<div class="line"></div>
<div class="errors">
<strong>Error 500:</strong> Cannot load default configuration from jar<br/>
<strong>Servlet:</strong> default<br/>
<strong>URI:</strong> /cts/massLookup/masstransform<br/>
<strong>Exception Message:</strong> Cannot load default configuration from jar <br/>
<strong>Caused by:</strong> Cannot load default configuration from jar <br/>
<strong>Class:</strong> Unknown <br/>
<strong>At Line:</strong> [-1] <br/>
<strong>Code Snippet:</strong><br/>
<div class="snippet">
</div>
</div>
<h3>Stack Trace</h3>
<div class="line"></div>
<div class="errors">
<pre>java.lang.IllegalStateException: Cannot load default configuration from jar
<br/> at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.loadSitemeshXML(Grails5535Factory.java:146)
<br/> at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.loadConfig(Grails5535Factory.java:73)
<br/> at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.refresh(Grails5535Factory.java:272)
<br/> at com.opensymphony.module.sitemesh.Factory.getInstance(Factory.java:56)
<br/> at com.opensymphony.sitemesh.webapp.SiteMeshFilter.initContentProcessor(SiteMeshFilter.java:107)
<br/> at org.codehaus.groovy.grails.web.sitemesh.GrailsPageFilter.doFilter(GrailsPageFilter.java:114)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.codehaus.groovy.grails.web.servlet.mvc.GrailsWebRequestFilter.doFilterInternal(GrailsWebRequestFilter.java:69)
<br/> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.codehaus.groovy.grails.web.filters.HiddenHttpMethodFilter.doFilterInternal(HiddenHttpMethodFilter.java:69)
<br/> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:88)
<br/> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
<br/> at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:237)
<br/> at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:474)
<br/> at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:119)
<br/> at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:480)
<br/> at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:226)
<br/> at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:935)
<br/> at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:404)
<br/> at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:184)
<br/> at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:870)
<br/> at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:117)
<br/> at org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:247)
<br/> at org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:151)
<br/> at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116)
<br/> at org.eclipse.jetty.server.Server.handle(Server.java:346)
<br/> at org.eclipse.jetty.server.HttpConnection.handleRequest(HttpConnection.java:596)
<br/> at org.eclipse.jetty.server.HttpConnection$RequestHandler.headerComplete(HttpConnection.java:1051)
<br/> at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:592)
<br/> at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:214)
<br/> at org.eclipse.jetty.server.HttpConnection.handle(HttpConnection.java:426)
<br/> at org.eclipse.jetty.io.nio.SelectChannelEndPoint.handle(SelectChannelEndPoint.java:520)
<br/> at org.eclipse.jetty.io.nio.SelectChannelEndPoint$1.run(SelectChannelEndPoint.java:40)
<br/> at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:528)
<br/> at java.lang.Thread.run(Thread.java:619)
<br/></pre>
</div>
</div>
</div>
<div id="footer">
<!--
<style type="text/css">@import url("/cts/css/WebGUIStandards.css");</style>
<style type="text/css">@import url("/cts/css/FooterLayout.css");</style>
<div id="copy" align="center" valign="middle">
<div class="LabelFooter" align="center" valign="middle" style="padding:5px;">
<a class="Footer" href="http://binbase.fiehnlab.ucdavis.edu:8080/jira/secure/Dashboard.jspa">Report a problem</a>
| <a class="Footer" href="http://binbase.fiehnlab.ucdavis.edu:8080/jira/secure/Dashboard.jspa">Request a feature</a>
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Powered by a free Atlassian <a class="Footer" href='http://www.atlassian.com/software/jira'>JIRA</a> open source license
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<!-- google anlytics, do not change -->
<script type="text/javascript">
var gaJsHost = (("https:" == document.location.protocol) ? "https://ssl." : "http://www.");
document.write(unescape("%3Cscript src='" + gaJsHost + "google-analytics.com/ga.js' type='text/javascript'%3E%3C/script%3E"));
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try {
var pageTracker = _gat._getTracker("UA-2237528-17");
pageTracker._trackPageview();
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catch (err) {
}
</script>
</div>
</body>
</html>:36: parser error : attributes construct error
document.write('<div class=\"box\"><div class=\"errors-center\" >we recommen
^
<html>
<head>
<title>CTS: Chemical Translation Service</title>
<link rel="stylesheet" href="/cts/css/main.css"/>
<style type="text/css">@import url("/cts/css/pagination.css");</style>
<style type="text/css">@import url("/cts/css/font.css");</style>
<!--
<link rel="shortcut icon" href="/cts/images/favicon.ico" type="image/x-icon"/>
-->
<meta name="layout" content="main"/>
<script type="text/javascript" src="/cts/js/application.js"></script>
<script type="text/javascript" src="/cts/js/prototype/prototype.js"></script>
<meta name="layout" content="main"/>
</head>
<body class="BodyBackground">
<div id="spinner" class="spinner" style="display:none;">
<img src="/cts/images/spinner.gif" alt="Spinner"/>
</div>
<!-- testing for the browser and print an error message in case they use the internet explorer -->
<script type="text/javascript">
if (navigator.appName == 'Microsoft Internet Explorer') {
document.write('<div class=\"box\"><div class=\"errors-center\" >we recommend that you use Firefox, Safari or Google Chrome for the best expirience! Right now you are using the Microsoft Internet Eplorer and we do not actively support or recommend it!</div></div>');
}
</script>
<div id="main">
<div class="page_header">
Chemical Translation Service
</div>
<div class="box">
<h3><a href="/cts/homePage/index" class="home">Home</a></h3>
<div class="line"></div>
</div>
<div class="box">
<h3>Ooops, what did just happen?</h3>
<div class="line"></div>
<div class="message">
oh dear this is rather embarissing, but it looks like you discovered a bug. To help us avoiding this in the future, would you mind to send a bug report to <a href="mailto:wohlgemuth@ucdavis.edu">Gert Wohlgemuth</a> with as many informations as possible, so we can reproduce this and fix it!
</div>
<h3>Error Details</h3>
<div class="line"></div>
<div class="errors">
<strong>Error 500:</strong> Cannot load default configuration from jar<br/>
<strong>Servlet:</strong> default<br/>
<strong>URI:</strong> /cts/massLookup/masstransform<br/>
<strong>Exception Message:</strong> Cannot load default configuration from jar <br/>
<strong>Caused by:</strong> Cannot load default configuration from jar <br/>
<strong>Class:</strong> Unknown <br/>
<strong>At Line:</strong> [-1] <br/>
<strong>Code Snippet:</strong><br/>
<div class="snippet">
</div>
</div>
<h3>Stack Trace</h3>
<div class="line"></div>
<div class="errors">
<pre>java.lang.IllegalStateException: Cannot load default configuration from jar
<br/> at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.loadSitemeshXML(Grails5535Factory.java:146)
<br/> at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.loadConfig(Grails5535Factory.java:73)
<br/> at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.refresh(Grails5535Factory.java:272)
<br/> at com.opensymphony.module.sitemesh.Factory.getInstance(Factory.java:56)
<br/> at com.opensymphony.sitemesh.webapp.SiteMeshFilter.initContentProcessor(SiteMeshFilter.java:107)
<br/> at org.codehaus.groovy.grails.web.sitemesh.GrailsPageFilter.doFilter(GrailsPageFilter.java:114)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.codehaus.groovy.grails.web.servlet.mvc.GrailsWebRequestFilter.doFilterInternal(GrailsWebRequestFilter.java:69)
<br/> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.codehaus.groovy.grails.web.filters.HiddenHttpMethodFilter.doFilterInternal(HiddenHttpMethodFilter.java:69)
<br/> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:88)
<br/> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
<br/> at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:237)
<br/> at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:474)
<br/> at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:119)
<br/> at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:480)
<br/> at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:226)
<br/> at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:935)
<br/> at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:404)
<br/> at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:184)
<br/> at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:870)
<br/> at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:117)
<br/> at org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:247)
<br/> at org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:151)
<br/> at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116)
<br/> at org.eclipse.jetty.server.Server.handle(Server.java:346)
<br/> at org.eclipse.jetty.server.HttpConnection.handleRequest(HttpConnection.java:596)
<br/> at org.eclipse.jetty.server.HttpConnection$RequestHandler.headerComplete(HttpConnection.java:1051)
<br/> at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:592)
<br/> at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:214)
<br/> at org.eclipse.jetty.server.HttpConnection.handle(HttpConnection.java:426)
<br/> at org.eclipse.jetty.io.nio.SelectChannelEndPoint.handle(SelectChannelEndPoint.java:520)
<br/> at org.eclipse.jetty.io.nio.SelectChannelEndPoint$1.run(SelectChannelEndPoint.java:40)
<br/> at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:528)
<br/> at java.lang.Thread.run(Thread.java:619)
<br/></pre>
</div>
</div>
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<!-- google anlytics, do not change -->
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</html>:36: parser error : Couldn't find end of Start Tag div line 36
document.write('<div class=\"box\"><div class=\"errors-center\" >we recommen
^
<html>
<head>
<title>CTS: Chemical Translation Service</title>
<link rel="stylesheet" href="/cts/css/main.css"/>
<style type="text/css">@import url("/cts/css/pagination.css");</style>
<style type="text/css">@import url("/cts/css/font.css");</style>
<!--
<link rel="shortcut icon" href="/cts/images/favicon.ico" type="image/x-icon"/>
-->
<meta name="layout" content="main"/>
<script type="text/javascript" src="/cts/js/application.js"></script>
<script type="text/javascript" src="/cts/js/prototype/prototype.js"></script>
<meta name="layout" content="main"/>
</head>
<body class="BodyBackground">
<div id="spinner" class="spinner" style="display:none;">
<img src="/cts/images/spinner.gif" alt="Spinner"/>
</div>
<!-- testing for the browser and print an error message in case they use the internet explorer -->
<script type="text/javascript">
if (navigator.appName == 'Microsoft Internet Explorer') {
document.write('<div class=\"box\"><div class=\"errors-center\" >we recommend that you use Firefox, Safari or Google Chrome for the best expirience! Right now you are using the Microsoft Internet Eplorer and we do not actively support or recommend it!</div></div>');
}
</script>
<div id="main">
<div class="page_header">
Chemical Translation Service
</div>
<div class="box">
<h3><a href="/cts/homePage/index" class="home">Home</a></h3>
<div class="line"></div>
</div>
<div class="box">
<h3>Ooops, what did just happen?</h3>
<div class="line"></div>
<div class="message">
oh dear this is rather embarissing, but it looks like you discovered a bug. To help us avoiding this in the future, would you mind to send a bug report to <a href="mailto:wohlgemuth@ucdavis.edu">Gert Wohlgemuth</a> with as many informations as possible, so we can reproduce this and fix it!
</div>
<h3>Error Details</h3>
<div class="line"></div>
<div class="errors">
<strong>Error 500:</strong> Cannot load default configuration from jar<br/>
<strong>Servlet:</strong> default<br/>
<strong>URI:</strong> /cts/massLookup/masstransform<br/>
<strong>Exception Message:</strong> Cannot load default configuration from jar <br/>
<strong>Caused by:</strong> Cannot load default configuration from jar <br/>
<strong>Class:</strong> Unknown <br/>
<strong>At Line:</strong> [-1] <br/>
<strong>Code Snippet:</strong><br/>
<div class="snippet">
</div>
</div>
<h3>Stack Trace</h3>
<div class="line"></div>
<div class="errors">
<pre>java.lang.IllegalStateException: Cannot load default configuration from jar
<br/> at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.loadSitemeshXML(Grails5535Factory.java:146)
<br/> at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.loadConfig(Grails5535Factory.java:73)
<br/> at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.refresh(Grails5535Factory.java:272)
<br/> at com.opensymphony.module.sitemesh.Factory.getInstance(Factory.java:56)
<br/> at com.opensymphony.sitemesh.webapp.SiteMeshFilter.initContentProcessor(SiteMeshFilter.java:107)
<br/> at org.codehaus.groovy.grails.web.sitemesh.GrailsPageFilter.doFilter(GrailsPageFilter.java:114)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.codehaus.groovy.grails.web.servlet.mvc.GrailsWebRequestFilter.doFilterInternal(GrailsWebRequestFilter.java:69)
<br/> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.codehaus.groovy.grails.web.filters.HiddenHttpMethodFilter.doFilterInternal(HiddenHttpMethodFilter.java:69)
<br/> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:88)
<br/> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
<br/> at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:237)
<br/> at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:474)
<br/> at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:119)
<br/> at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:480)
<br/> at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:226)
<br/> at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:935)
<br/> at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:404)
<br/> at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:184)
<br/> at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:870)
<br/> at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:117)
<br/> at org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:247)
<br/> at org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:151)
<br/> at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116)
<br/> at org.eclipse.jetty.server.Server.handle(Server.java:346)
<br/> at org.eclipse.jetty.server.HttpConnection.handleRequest(HttpConnection.java:596)
<br/> at org.eclipse.jetty.server.HttpConnection$RequestHandler.headerComplete(HttpConnection.java:1051)
<br/> at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:592)
<br/> at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:214)
<br/> at org.eclipse.jetty.server.HttpConnection.handle(HttpConnection.java:426)
<br/> at org.eclipse.jetty.io.nio.SelectChannelEndPoint.handle(SelectChannelEndPoint.java:520)
<br/> at org.eclipse.jetty.io.nio.SelectChannelEndPoint$1.run(SelectChannelEndPoint.java:40)
<br/> at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:528)
<br/> at java.lang.Thread.run(Thread.java:619)
<br/></pre>
</div>
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<style type="text/css">@import url("/cts/css/FooterLayout.css");</style>
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<div class="LabelFooter" align="center" valign="middle" style="padding:5px;">
<a class="Footer" href="http://binbase.fiehnlab.ucdavis.edu:8080/jira/secure/Dashboard.jspa">Report a problem</a>
| <a class="Footer" href="http://binbase.fiehnlab.ucdavis.edu:8080/jira/secure/Dashboard.jspa">Request a feature</a>
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var gaJsHost = (("https:" == document.location.protocol) ? "https://ssl." : "http://www.");
document.write(unescape("%3Cscript src='" + gaJsHost + "google-analytics.com/ga.js' type='text/javascript'%3E%3C/script%3E"));
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</body>
</html>:36: parser error : AttValue: " or ' expected
document.write('<div class=\"box\"><div class=\"errors-center\" >we recommen
^
<html>
<head>
<title>CTS: Chemical Translation Service</title>
<link rel="stylesheet" href="/cts/css/main.css"/>
<style type="text/css">@import url("/cts/css/pagination.css");</style>
<style type="text/css">@import url("/cts/css/font.css");</style>
<!--
<link rel="shortcut icon" href="/cts/images/favicon.ico" type="image/x-icon"/>
-->
<meta name="layout" content="main"/>
<script type="text/javascript" src="/cts/js/application.js"></script>
<script type="text/javascript" src="/cts/js/prototype/prototype.js"></script>
<meta name="layout" content="main"/>
</head>
<body class="BodyBackground">
<div id="spinner" class="spinner" style="display:none;">
<img src="/cts/images/spinner.gif" alt="Spinner"/>
</div>
<!-- testing for the browser and print an error message in case they use the internet explorer -->
<script type="text/javascript">
if (navigator.appName == 'Microsoft Internet Explorer') {
document.write('<div class=\"box\"><div class=\"errors-center\" >we recommend that you use Firefox, Safari or Google Chrome for the best expirience! Right now you are using the Microsoft Internet Eplorer and we do not actively support or recommend it!</div></div>');
}
</script>
<div id="main">
<div class="page_header">
Chemical Translation Service
</div>
<div class="box">
<h3><a href="/cts/homePage/index" class="home">Home</a></h3>
<div class="line"></div>
</div>
<div class="box">
<h3>Ooops, what did just happen?</h3>
<div class="line"></div>
<div class="message">
oh dear this is rather embarissing, but it looks like you discovered a bug. To help us avoiding this in the future, would you mind to send a bug report to <a href="mailto:wohlgemuth@ucdavis.edu">Gert Wohlgemuth</a> with as many informations as possible, so we can reproduce this and fix it!
</div>
<h3>Error Details</h3>
<div class="line"></div>
<div class="errors">
<strong>Error 500:</strong> Cannot load default configuration from jar<br/>
<strong>Servlet:</strong> default<br/>
<strong>URI:</strong> /cts/massLookup/masstransform<br/>
<strong>Exception Message:</strong> Cannot load default configuration from jar <br/>
<strong>Caused by:</strong> Cannot load default configuration from jar <br/>
<strong>Class:</strong> Unknown <br/>
<strong>At Line:</strong> [-1] <br/>
<strong>Code Snippet:</strong><br/>
<div class="snippet">
</div>
</div>
<h3>Stack Trace</h3>
<div class="line"></div>
<div class="errors">
<pre>java.lang.IllegalStateException: Cannot load default configuration from jar
<br/> at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.loadSitemeshXML(Grails5535Factory.java:146)
<br/> at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.loadConfig(Grails5535Factory.java:73)
<br/> at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.refresh(Grails5535Factory.java:272)
<br/> at com.opensymphony.module.sitemesh.Factory.getInstance(Factory.java:56)
<br/> at com.opensymphony.sitemesh.webapp.SiteMeshFilter.initContentProcessor(SiteMeshFilter.java:107)
<br/> at org.codehaus.groovy.grails.web.sitemesh.GrailsPageFilter.doFilter(GrailsPageFilter.java:114)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.codehaus.groovy.grails.web.servlet.mvc.GrailsWebRequestFilter.doFilterInternal(GrailsWebRequestFilter.java:69)
<br/> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.codehaus.groovy.grails.web.filters.HiddenHttpMethodFilter.doFilterInternal(HiddenHttpMethodFilter.java:69)
<br/> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:88)
<br/> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
<br/> at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:237)
<br/> at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:474)
<br/> at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:119)
<br/> at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:480)
<br/> at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:226)
<br/> at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:935)
<br/> at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:404)
<br/> at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:184)
<br/> at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:870)
<br/> at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:117)
<br/> at org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:247)
<br/> at org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:151)
<br/> at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116)
<br/> at org.eclipse.jetty.server.Server.handle(Server.java:346)
<br/> at org.eclipse.jetty.server.HttpConnection.handleRequest(HttpConnection.java:596)
<br/> at org.eclipse.jetty.server.HttpConnection$RequestHandler.headerComplete(HttpConnection.java:1051)
<br/> at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:592)
<br/> at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:214)
<br/> at org.eclipse.jetty.server.HttpConnection.handle(HttpConnection.java:426)
<br/> at org.eclipse.jetty.io.nio.SelectChannelEndPoint.handle(SelectChannelEndPoint.java:520)
<br/> at org.eclipse.jetty.io.nio.SelectChannelEndPoint$1.run(SelectChannelEndPoint.java:40)
<br/> at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:528)
<br/> at java.lang.Thread.run(Thread.java:619)
<br/></pre>
</div>
</div>
</div>
<div id="footer">
<!--
<style type="text/css">@import url("/cts/css/WebGUIStandards.css");</style>
<style type="text/css">@import url("/cts/css/FooterLayout.css");</style>
<div id="copy" align="center" valign="middle">
<div class="LabelFooter" align="center" valign="middle" style="padding:5px;">
<a class="Footer" href="http://binbase.fiehnlab.ucdavis.edu:8080/jira/secure/Dashboard.jspa">Report a problem</a>
| <a class="Footer" href="http://binbase.fiehnlab.ucdavis.edu:8080/jira/secure/Dashboard.jspa">Request a feature</a>
| <a class="Footer" href="http://binbase.fiehnlab.ucdavis.edu:8080/jira/secure/Administrators.jspa">Contact administrators</a>
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<div class="LabelFooter" align="center" valign="middle">
Powered by a free Atlassian <a class="Footer" href='http://www.atlassian.com/software/jira'>JIRA</a> open source license
</div>
</div>
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<!-- google anlytics, do not change -->
<script type="text/javascript">
var gaJsHost = (("https:" == document.location.protocol) ? "https://ssl." : "http://www.");
document.write(unescape("%3Cscript src='" + gaJsHost + "google-analytics.com/ga.js' type='text/javascript'%3E%3C/script%3E"));
</script>
<script type="text/javascript">
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var pageTracker = _gat._getTracker("UA-2237528-17");
pageTracker._trackPageview();
}
catch (err) {
}
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</div>
</body>
</html>:36: parser error : attributes construct error
document.write('<div class=\"box\"><div class=\"errors-center\" >we recommen
^
<html>
<head>
<title>CTS: Chemical Translation Service</title>
<link rel="stylesheet" href="/cts/css/main.css"/>
<style type="text/css">@import url("/cts/css/pagination.css");</style>
<style type="text/css">@import url("/cts/css/font.css");</style>
<!--
<link rel="shortcut icon" href="/cts/images/favicon.ico" type="image/x-icon"/>
-->
<meta name="layout" content="main"/>
<script type="text/javascript" src="/cts/js/application.js"></script>
<script type="text/javascript" src="/cts/js/prototype/prototype.js"></script>
<meta name="layout" content="main"/>
</head>
<body class="BodyBackground">
<div id="spinner" class="spinner" style="display:none;">
<img src="/cts/images/spinner.gif" alt="Spinner"/>
</div>
<!-- testing for the browser and print an error message in case they use the internet explorer -->
<script type="text/javascript">
if (navigator.appName == 'Microsoft Internet Explorer') {
document.write('<div class=\"box\"><div class=\"errors-center\" >we recommend that you use Firefox, Safari or Google Chrome for the best expirience! Right now you are using the Microsoft Internet Eplorer and we do not actively support or recommend it!</div></div>');
}
</script>
<div id="main">
<div class="page_header">
Chemical Translation Service
</div>
<div class="box">
<h3><a href="/cts/homePage/index" class="home">Home</a></h3>
<div class="line"></div>
</div>
<div class="box">
<h3>Ooops, what did just happen?</h3>
<div class="line"></div>
<div class="message">
oh dear this is rather embarissing, but it looks like you discovered a bug. To help us avoiding this in the future, would you mind to send a bug report to <a href="mailto:wohlgemuth@ucdavis.edu">Gert Wohlgemuth</a> with as many informations as possible, so we can reproduce this and fix it!
</div>
<h3>Error Details</h3>
<div class="line"></div>
<div class="errors">
<strong>Error 500:</strong> Cannot load default configuration from jar<br/>
<strong>Servlet:</strong> default<br/>
<strong>URI:</strong> /cts/massLookup/masstransform<br/>
<strong>Exception Message:</strong> Cannot load default configuration from jar <br/>
<strong>Caused by:</strong> Cannot load default configuration from jar <br/>
<strong>Class:</strong> Unknown <br/>
<strong>At Line:</strong> [-1] <br/>
<strong>Code Snippet:</strong><br/>
<div class="snippet">
</div>
</div>
<h3>Stack Trace</h3>
<div class="line"></div>
<div class="errors">
<pre>java.lang.IllegalStateException: Cannot load default configuration from jar
<br/> at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.loadSitemeshXML(Grails5535Factory.java:146)
<br/> at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.loadConfig(Grails5535Factory.java:73)
<br/> at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.refresh(Grails5535Factory.java:272)
<br/> at com.opensymphony.module.sitemesh.Factory.getInstance(Factory.java:56)
<br/> at com.opensymphony.sitemesh.webapp.SiteMeshFilter.initContentProcessor(SiteMeshFilter.java:107)
<br/> at org.codehaus.groovy.grails.web.sitemesh.GrailsPageFilter.doFilter(GrailsPageFilter.java:114)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.codehaus.groovy.grails.web.servlet.mvc.GrailsWebRequestFilter.doFilterInternal(GrailsWebRequestFilter.java:69)
<br/> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.codehaus.groovy.grails.web.filters.HiddenHttpMethodFilter.doFilterInternal(HiddenHttpMethodFilter.java:69)
<br/> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:88)
<br/> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
<br/> at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:237)
<br/> at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:474)
<br/> at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:119)
<br/> at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:480)
<br/> at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:226)
<br/> at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:935)
<br/> at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:404)
<br/> at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:184)
<br/> at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:870)
<br/> at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:117)
<br/> at org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:247)
<br/> at org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:151)
<br/> at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116)
<br/> at org.eclipse.jetty.server.Server.handle(Server.java:346)
<br/> at org.eclipse.jetty.server.HttpConnection.handleRequest(HttpConnection.java:596)
<br/> at org.eclipse.jetty.server.HttpConnection$RequestHandler.headerComplete(HttpConnection.java:1051)
<br/> at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:592)
<br/> at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:214)
<br/> at org.eclipse.jetty.server.HttpConnection.handle(HttpConnection.java:426)
<br/> at org.eclipse.jetty.io.nio.SelectChannelEndPoint.handle(SelectChannelEndPoint.java:520)
<br/> at org.eclipse.jetty.io.nio.SelectChannelEndPoint$1.run(SelectChannelEndPoint.java:40)
<br/> at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:528)
<br/> at java.lang.Thread.run(Thread.java:619)
<br/></pre>
</div>
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<!-- google anlytics, do not change -->
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</html>:36: parser error : Couldn't find end of Start Tag div line 36
document.write('<div class=\"box\"><div class=\"errors-center\" >we recommen
^
<html>
<head>
<title>CTS: Chemical Translation Service</title>
<link rel="stylesheet" href="/cts/css/main.css"/>
<style type="text/css">@import url("/cts/css/pagination.css");</style>
<style type="text/css">@import url("/cts/css/font.css");</style>
<!--
<link rel="shortcut icon" href="/cts/images/favicon.ico" type="image/x-icon"/>
-->
<meta name="layout" content="main"/>
<script type="text/javascript" src="/cts/js/application.js"></script>
<script type="text/javascript" src="/cts/js/prototype/prototype.js"></script>
<meta name="layout" content="main"/>
</head>
<body class="BodyBackground">
<div id="spinner" class="spinner" style="display:none;">
<img src="/cts/images/spinner.gif" alt="Spinner"/>
</div>
<!-- testing for the browser and print an error message in case they use the internet explorer -->
<script type="text/javascript">
if (navigator.appName == 'Microsoft Internet Explorer') {
document.write('<div class=\"box\"><div class=\"errors-center\" >we recommend that you use Firefox, Safari or Google Chrome for the best expirience! Right now you are using the Microsoft Internet Eplorer and we do not actively support or recommend it!</div></div>');
}
</script>
<div id="main">
<div class="page_header">
Chemical Translation Service
</div>
<div class="box">
<h3><a href="/cts/homePage/index" class="home">Home</a></h3>
<div class="line"></div>
</div>
<div class="box">
<h3>Ooops, what did just happen?</h3>
<div class="line"></div>
<div class="message">
oh dear this is rather embarissing, but it looks like you discovered a bug. To help us avoiding this in the future, would you mind to send a bug report to <a href="mailto:wohlgemuth@ucdavis.edu">Gert Wohlgemuth</a> with as many informations as possible, so we can reproduce this and fix it!
</div>
<h3>Error Details</h3>
<div class="line"></div>
<div class="errors">
<strong>Error 500:</strong> Cannot load default configuration from jar<br/>
<strong>Servlet:</strong> default<br/>
<strong>URI:</strong> /cts/massLookup/masstransform<br/>
<strong>Exception Message:</strong> Cannot load default configuration from jar <br/>
<strong>Caused by:</strong> Cannot load default configuration from jar <br/>
<strong>Class:</strong> Unknown <br/>
<strong>At Line:</strong> [-1] <br/>
<strong>Code Snippet:</strong><br/>
<div class="snippet">
</div>
</div>
<h3>Stack Trace</h3>
<div class="line"></div>
<div class="errors">
<pre>java.lang.IllegalStateException: Cannot load default configuration from jar
<br/> at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.loadSitemeshXML(Grails5535Factory.java:146)
<br/> at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.loadConfig(Grails5535Factory.java:73)
<br/> at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.refresh(Grails5535Factory.java:272)
<br/> at com.opensymphony.module.sitemesh.Factory.getInstance(Factory.java:56)
<br/> at com.opensymphony.sitemesh.webapp.SiteMeshFilter.initContentProcessor(SiteMeshFilter.java:107)
<br/> at org.codehaus.groovy.grails.web.sitemesh.GrailsPageFilter.doFilter(GrailsPageFilter.java:114)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.codehaus.groovy.grails.web.servlet.mvc.GrailsWebRequestFilter.doFilterInternal(GrailsWebRequestFilter.java:69)
<br/> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.codehaus.groovy.grails.web.filters.HiddenHttpMethodFilter.doFilterInternal(HiddenHttpMethodFilter.java:69)
<br/> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:88)
<br/> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
<br/> at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:237)
<br/> at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:474)
<br/> at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:119)
<br/> at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:480)
<br/> at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:226)
<br/> at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:935)
<br/> at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:404)
<br/> at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:184)
<br/> at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:870)
<br/> at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:117)
<br/> at org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:247)
<br/> at org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:151)
<br/> at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116)
<br/> at org.eclipse.jetty.server.Server.handle(Server.java:346)
<br/> at org.eclipse.jetty.server.HttpConnection.handleRequest(HttpConnection.java:596)
<br/> at org.eclipse.jetty.server.HttpConnection$RequestHandler.headerComplete(HttpConnection.java:1051)
<br/> at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:592)
<br/> at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:214)
<br/> at org.eclipse.jetty.server.HttpConnection.handle(HttpConnection.java:426)
<br/> at org.eclipse.jetty.io.nio.SelectChannelEndPoint.handle(SelectChannelEndPoint.java:520)
<br/> at org.eclipse.jetty.io.nio.SelectChannelEndPoint$1.run(SelectChannelEndPoint.java:40)
<br/> at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:528)
<br/> at java.lang.Thread.run(Thread.java:619)
<br/></pre>
</div>
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<div class="LabelFooter" align="center" valign="middle" style="padding:5px;">
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| <a class="Footer" href="http://binbase.fiehnlab.ucdavis.edu:8080/jira/secure/Dashboard.jspa">Request a feature</a>
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var gaJsHost = (("https:" == document.location.protocol) ? "https://ssl." : "http://www.");
document.write(unescape("%3Cscript src='" + gaJsHost + "google-analytics.com/ga.js' type='text/javascript'%3E%3C/script%3E"));
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</div>
</body>
</html>:36: parser error : Opening and ending tag mismatch: script line 33 and div
Microsoft Internet Eplorer and we do not actively support or recommend it!</div>
^
<html>
<head>
<title>CTS: Chemical Translation Service</title>
<link rel="stylesheet" href="/cts/css/main.css"/>
<style type="text/css">@import url("/cts/css/pagination.css");</style>
<style type="text/css">@import url("/cts/css/font.css");</style>
<!--
<link rel="shortcut icon" href="/cts/images/favicon.ico" type="image/x-icon"/>
-->
<meta name="layout" content="main"/>
<script type="text/javascript" src="/cts/js/application.js"></script>
<script type="text/javascript" src="/cts/js/prototype/prototype.js"></script>
<meta name="layout" content="main"/>
</head>
<body class="BodyBackground">
<div id="spinner" class="spinner" style="display:none;">
<img src="/cts/images/spinner.gif" alt="Spinner"/>
</div>
<!-- testing for the browser and print an error message in case they use the internet explorer -->
<script type="text/javascript">
if (navigator.appName == 'Microsoft Internet Explorer') {
document.write('<div class=\"box\"><div class=\"errors-center\" >we recommend that you use Firefox, Safari or Google Chrome for the best expirience! Right now you are using the Microsoft Internet Eplorer and we do not actively support or recommend it!</div></div>');
}
</script>
<div id="main">
<div class="page_header">
Chemical Translation Service
</div>
<div class="box">
<h3><a href="/cts/homePage/index" class="home">Home</a></h3>
<div class="line"></div>
</div>
<div class="box">
<h3>Ooops, what did just happen?</h3>
<div class="line"></div>
<div class="message">
oh dear this is rather embarissing, but it looks like you discovered a bug. To help us avoiding this in the future, would you mind to send a bug report to <a href="mailto:wohlgemuth@ucdavis.edu">Gert Wohlgemuth</a> with as many informations as possible, so we can reproduce this and fix it!
</div>
<h3>Error Details</h3>
<div class="line"></div>
<div class="errors">
<strong>Error 500:</strong> Cannot load default configuration from jar<br/>
<strong>Servlet:</strong> default<br/>
<strong>URI:</strong> /cts/massLookup/masstransform<br/>
<strong>Exception Message:</strong> Cannot load default configuration from jar <br/>
<strong>Caused by:</strong> Cannot load default configuration from jar <br/>
<strong>Class:</strong> Unknown <br/>
<strong>At Line:</strong> [-1] <br/>
<strong>Code Snippet:</strong><br/>
<div class="snippet">
</div>
</div>
<h3>Stack Trace</h3>
<div class="line"></div>
<div class="errors">
<pre>java.lang.IllegalStateException: Cannot load default configuration from jar
<br/> at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.loadSitemeshXML(Grails5535Factory.java:146)
<br/> at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.loadConfig(Grails5535Factory.java:73)
<br/> at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.refresh(Grails5535Factory.java:272)
<br/> at com.opensymphony.module.sitemesh.Factory.getInstance(Factory.java:56)
<br/> at com.opensymphony.sitemesh.webapp.SiteMeshFilter.initContentProcessor(SiteMeshFilter.java:107)
<br/> at org.codehaus.groovy.grails.web.sitemesh.GrailsPageFilter.doFilter(GrailsPageFilter.java:114)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.codehaus.groovy.grails.web.servlet.mvc.GrailsWebRequestFilter.doFilterInternal(GrailsWebRequestFilter.java:69)
<br/> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.codehaus.groovy.grails.web.filters.HiddenHttpMethodFilter.doFilterInternal(HiddenHttpMethodFilter.java:69)
<br/> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:88)
<br/> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
<br/> at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:237)
<br/> at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:474)
<br/> at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:119)
<br/> at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:480)
<br/> at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:226)
<br/> at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:935)
<br/> at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:404)
<br/> at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:184)
<br/> at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:870)
<br/> at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:117)
<br/> at org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:247)
<br/> at org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:151)
<br/> at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116)
<br/> at org.eclipse.jetty.server.Server.handle(Server.java:346)
<br/> at org.eclipse.jetty.server.HttpConnection.handleRequest(HttpConnection.java:596)
<br/> at org.eclipse.jetty.server.HttpConnection$RequestHandler.headerComplete(HttpConnection.java:1051)
<br/> at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:592)
<br/> at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:214)
<br/> at org.eclipse.jetty.server.HttpConnection.handle(HttpConnection.java:426)
<br/> at org.eclipse.jetty.io.nio.SelectChannelEndPoint.handle(SelectChannelEndPoint.java:520)
<br/> at org.eclipse.jetty.io.nio.SelectChannelEndPoint$1.run(SelectChannelEndPoint.java:40)
<br/> at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:528)
<br/> at java.lang.Thread.run(Thread.java:619)
<br/></pre>
</div>
</div>
</div>
<div id="footer">
<!--
<style type="text/css">@import url("/cts/css/WebGUIStandards.css");</style>
<style type="text/css">@import url("/cts/css/FooterLayout.css");</style>
<div id="copy" align="center" valign="middle">
<div class="LabelFooter" align="center" valign="middle" style="padding:5px;">
<a class="Footer" href="http://binbase.fiehnlab.ucdavis.edu:8080/jira/secure/Dashboard.jspa">Report a problem</a>
| <a class="Footer" href="http://binbase.fiehnlab.ucdavis.edu:8080/jira/secure/Dashboard.jspa">Request a feature</a>
| <a class="Footer" href="http://binbase.fiehnlab.ucdavis.edu:8080/jira/secure/Administrators.jspa">Contact administrators</a>
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<!-- google anlytics, do not change -->
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var gaJsHost = (("https:" == document.location.protocol) ? "https://ssl." : "http://www.");
document.write(unescape("%3Cscript src='" + gaJsHost + "google-analytics.com/ga.js' type='text/javascript'%3E%3C/script%3E"));
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var pageTracker = _gat._getTracker("UA-2237528-17");
pageTracker._trackPageview();
}
catch (err) {
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</script>
</div>
</body>
</html>:36: parser error : Opening and ending tag mismatch: body line 27 and div
oft Internet Eplorer and we do not actively support or recommend it!</div></div>
^
<html>
<head>
<title>CTS: Chemical Translation Service</title>
<link rel="stylesheet" href="/cts/css/main.css"/>
<style type="text/css">@import url("/cts/css/pagination.css");</style>
<style type="text/css">@import url("/cts/css/font.css");</style>
<!--
<link rel="shortcut icon" href="/cts/images/favicon.ico" type="image/x-icon"/>
-->
<meta name="layout" content="main"/>
<script type="text/javascript" src="/cts/js/application.js"></script>
<script type="text/javascript" src="/cts/js/prototype/prototype.js"></script>
<meta name="layout" content="main"/>
</head>
<body class="BodyBackground">
<div id="spinner" class="spinner" style="display:none;">
<img src="/cts/images/spinner.gif" alt="Spinner"/>
</div>
<!-- testing for the browser and print an error message in case they use the internet explorer -->
<script type="text/javascript">
if (navigator.appName == 'Microsoft Internet Explorer') {
document.write('<div class=\"box\"><div class=\"errors-center\" >we recommend that you use Firefox, Safari or Google Chrome for the best expirience! Right now you are using the Microsoft Internet Eplorer and we do not actively support or recommend it!</div></div>');
}
</script>
<div id="main">
<div class="page_header">
Chemical Translation Service
</div>
<div class="box">
<h3><a href="/cts/homePage/index" class="home">Home</a></h3>
<div class="line"></div>
</div>
<div class="box">
<h3>Ooops, what did just happen?</h3>
<div class="line"></div>
<div class="message">
oh dear this is rather embarissing, but it looks like you discovered a bug. To help us avoiding this in the future, would you mind to send a bug report to <a href="mailto:wohlgemuth@ucdavis.edu">Gert Wohlgemuth</a> with as many informations as possible, so we can reproduce this and fix it!
</div>
<h3>Error Details</h3>
<div class="line"></div>
<div class="errors">
<strong>Error 500:</strong> Cannot load default configuration from jar<br/>
<strong>Servlet:</strong> default<br/>
<strong>URI:</strong> /cts/massLookup/masstransform<br/>
<strong>Exception Message:</strong> Cannot load default configuration from jar <br/>
<strong>Caused by:</strong> Cannot load default configuration from jar <br/>
<strong>Class:</strong> Unknown <br/>
<strong>At Line:</strong> [-1] <br/>
<strong>Code Snippet:</strong><br/>
<div class="snippet">
</div>
</div>
<h3>Stack Trace</h3>
<div class="line"></div>
<div class="errors">
<pre>java.lang.IllegalStateException: Cannot load default configuration from jar
<br/> at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.loadSitemeshXML(Grails5535Factory.java:146)
<br/> at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.loadConfig(Grails5535Factory.java:73)
<br/> at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.refresh(Grails5535Factory.java:272)
<br/> at com.opensymphony.module.sitemesh.Factory.getInstance(Factory.java:56)
<br/> at com.opensymphony.sitemesh.webapp.SiteMeshFilter.initContentProcessor(SiteMeshFilter.java:107)
<br/> at org.codehaus.groovy.grails.web.sitemesh.GrailsPageFilter.doFilter(GrailsPageFilter.java:114)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.codehaus.groovy.grails.web.servlet.mvc.GrailsWebRequestFilter.doFilterInternal(GrailsWebRequestFilter.java:69)
<br/> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.codehaus.groovy.grails.web.filters.HiddenHttpMethodFilter.doFilterInternal(HiddenHttpMethodFilter.java:69)
<br/> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:88)
<br/> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
<br/> at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:237)
<br/> at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:474)
<br/> at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:119)
<br/> at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:480)
<br/> at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:226)
<br/> at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:935)
<br/> at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:404)
<br/> at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:184)
<br/> at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:870)
<br/> at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:117)
<br/> at org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:247)
<br/> at org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:151)
<br/> at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116)
<br/> at org.eclipse.jetty.server.Server.handle(Server.java:346)
<br/> at org.eclipse.jetty.server.HttpConnection.handleRequest(HttpConnection.java:596)
<br/> at org.eclipse.jetty.server.HttpConnection$RequestHandler.headerComplete(HttpConnection.java:1051)
<br/> at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:592)
<br/> at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:214)
<br/> at org.eclipse.jetty.server.HttpConnection.handle(HttpConnection.java:426)
<br/> at org.eclipse.jetty.io.nio.SelectChannelEndPoint.handle(SelectChannelEndPoint.java:520)
<br/> at org.eclipse.jetty.io.nio.SelectChannelEndPoint$1.run(SelectChannelEndPoint.java:40)
<br/> at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:528)
<br/> at java.lang.Thread.run(Thread.java:619)
<br/></pre>
</div>
</div>
</div>
<div id="footer">
<!--
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<!-- google anlytics, do not change -->
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</body>
</html>:39: parser error : Opening and ending tag mismatch: html line 1 and script
</script>
^
<html>
<head>
<title>CTS: Chemical Translation Service</title>
<link rel="stylesheet" href="/cts/css/main.css"/>
<style type="text/css">@import url("/cts/css/pagination.css");</style>
<style type="text/css">@import url("/cts/css/font.css");</style>
<!--
<link rel="shortcut icon" href="/cts/images/favicon.ico" type="image/x-icon"/>
-->
<meta name="layout" content="main"/>
<script type="text/javascript" src="/cts/js/application.js"></script>
<script type="text/javascript" src="/cts/js/prototype/prototype.js"></script>
<meta name="layout" content="main"/>
</head>
<body class="BodyBackground">
<div id="spinner" class="spinner" style="display:none;">
<img src="/cts/images/spinner.gif" alt="Spinner"/>
</div>
<!-- testing for the browser and print an error message in case they use the internet explorer -->
<script type="text/javascript">
if (navigator.appName == 'Microsoft Internet Explorer') {
document.write('<div class=\"box\"><div class=\"errors-center\" >we recommend that you use Firefox, Safari or Google Chrome for the best expirience! Right now you are using the Microsoft Internet Eplorer and we do not actively support or recommend it!</div></div>');
}
</script>
<div id="main">
<div class="page_header">
Chemical Translation Service
</div>
<div class="box">
<h3><a href="/cts/homePage/index" class="home">Home</a></h3>
<div class="line"></div>
</div>
<div class="box">
<h3>Ooops, what did just happen?</h3>
<div class="line"></div>
<div class="message">
oh dear this is rather embarissing, but it looks like you discovered a bug. To help us avoiding this in the future, would you mind to send a bug report to <a href="mailto:wohlgemuth@ucdavis.edu">Gert Wohlgemuth</a> with as many informations as possible, so we can reproduce this and fix it!
</div>
<h3>Error Details</h3>
<div class="line"></div>
<div class="errors">
<strong>Error 500:</strong> Cannot load default configuration from jar<br/>
<strong>Servlet:</strong> default<br/>
<strong>URI:</strong> /cts/massLookup/masstransform<br/>
<strong>Exception Message:</strong> Cannot load default configuration from jar <br/>
<strong>Caused by:</strong> Cannot load default configuration from jar <br/>
<strong>Class:</strong> Unknown <br/>
<strong>At Line:</strong> [-1] <br/>
<strong>Code Snippet:</strong><br/>
<div class="snippet">
</div>
</div>
<h3>Stack Trace</h3>
<div class="line"></div>
<div class="errors">
<pre>java.lang.IllegalStateException: Cannot load default configuration from jar
<br/> at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.loadSitemeshXML(Grails5535Factory.java:146)
<br/> at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.loadConfig(Grails5535Factory.java:73)
<br/> at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.refresh(Grails5535Factory.java:272)
<br/> at com.opensymphony.module.sitemesh.Factory.getInstance(Factory.java:56)
<br/> at com.opensymphony.sitemesh.webapp.SiteMeshFilter.initContentProcessor(SiteMeshFilter.java:107)
<br/> at org.codehaus.groovy.grails.web.sitemesh.GrailsPageFilter.doFilter(GrailsPageFilter.java:114)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.codehaus.groovy.grails.web.servlet.mvc.GrailsWebRequestFilter.doFilterInternal(GrailsWebRequestFilter.java:69)
<br/> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.codehaus.groovy.grails.web.filters.HiddenHttpMethodFilter.doFilterInternal(HiddenHttpMethodFilter.java:69)
<br/> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:88)
<br/> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
<br/> at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:237)
<br/> at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167)
<br/> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1323)
<br/> at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:474)
<br/> at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:119)
<br/> at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:480)
<br/> at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:226)
<br/> at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:935)
<br/> at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:404)
<br/> at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:184)
<br/> at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:870)
<br/> at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:117)
<br/> at org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:247)
<br/> at org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:151)
<br/> at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116)
<br/> at org.eclipse.jetty.server.Server.handle(Server.java:346)
<br/> at org.eclipse.jetty.server.HttpConnection.handleRequest(HttpConnection.java:596)
<br/> at org.eclipse.jetty.server.HttpConnection$RequestHandler.headerComplete(HttpConnection.java:1051)
<br/> at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:592)
<br/> at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:214)
<br/> at org.eclipse.jetty.server.HttpConnection.handle(HttpConnection.java:426)
<br/> at org.eclipse.jetty.io.nio.SelectChannelEndPoint.handle(SelectChannelEndPoint.java:520)
<br/> at org.eclipse.jetty.io.nio.SelectChannelEndPoint$1.run(SelectChannelEndPoint.java:40)
<br/> at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:528)
<br/> at java.lang.Thread.run(Thread.java:619)
<br/></pre>
</div>
</div>
</div>
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</html>:44: parser error : Extra content at the end of the document
<div id="main">
^
Error in res[[1]] : subscript out of bounds
Calls: getCtsRecord
Execution halted