Package: MLInterfaces

Version: 1.38.1

Command: /home/biocbuild/bbs-2.11-bioc/R/bin/R CMD check --no-vignettes --timings MLInterfaces_1.38.1.tar.gz

StartedAt: 2013-03-25 03:06:19 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 03:11:19 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 299.8 seconds

RetCode: 0

Status:  OK

CheckDir: MLInterfaces.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.11-bioc/meat/MLInterfaces.Rcheck’
* using R version 2.15.3 (2013-03-01)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MLInterfaces/DESCRIPTION’ ... OK
* this is package ‘MLInterfaces’ version ‘1.38.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘MLInterfaces’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package(s) unavailable to check Rd xrefs: ‘multicore’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
             user system elapsed
MLearn-new 25.114  1.664   27.71
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/loc/home/biocbuild/bbs-2.11-bioc/meat/MLInterfaces.Rcheck/00check.log’
for details.

* installing *source* package ‘MLInterfaces’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘MLInterfaces.Rnw’ 
   ‘MLint_devel.Rnw’ 
   ‘MLprac2_2.Rnw’ 
   ‘xvalComputerClusters.Rnw’ 
** testing if installed package can be loaded

* DONE (MLInterfaces)

name	user	system	elapsed
MLearn-new	25.114	1.664	27.710
RAB	0.136	0.008	0.144
balKfold.xvspec	0.008	0.000	0.010
classifierOutput-class	3.260	0.964	2.968
clusteringOutput-class	0.000	0.000	0.014
confuMat-methods	0.308	0.024	0.452
fs.absT	0.024	0.000	0.024
fsHistory	2.244	0.308	0.197
learnerSchema-class	0.000	0.000	0.001
planarPlot-methods	2.712	0.140	2.874
predict.classifierOutput	4.128	0.004	4.137
raboostCont-class	0.000	0.000	0.002
varImpStruct-class	0.928	0.036	0.968
xvalLoop	0	0	0
xvalSpec	0.264	0.204	0.396