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Package 321/565HostnameOS / ArchBUILDCHECKBUILD BIN
LVSmiRNA 1.7.0
Stefano Calza
Snapshot Date: 2012-06-20 15:22:40 -0700 (Wed, 20 Jun 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/LVSmiRNA
Last Changed Rev: 64680 / Revision: 66885
Last Changed Date: 2012-03-30 15:15:56 -0700 (Fri, 30 Mar 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]
perceval Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: LVSmiRNA
Version: 1.7.0
Command: rm -rf LVSmiRNA.buildbin-libdir && mkdir LVSmiRNA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh LVSmiRNA_1.7.0.tar.gz /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R LVSmiRNA.buildbin-libdir
StartedAt: 2012-06-21 05:00:08 -0700 (Thu, 21 Jun 2012)
EndedAt: 2012-06-21 05:00:26 -0700 (Thu, 21 Jun 2012)
EllapsedTime: 18.4 seconds
RetCode: 0
Status:  OK 
PackageFile: LVSmiRNA_1.7.0.tgz
PackageFileSize: 573.9 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=LVSmiRNA.buildbin-libdir LVSmiRNA_1.7.0.tar.gz'
>>>>>>> 

* installing *source* package 'LVSmiRNA' ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic  -c basic_fns.c -o basic_fns.o
basic_fns.c: In function 'lvs_median':
basic_fns.c:146: warning: unused variable 'i'
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic  -c init.c -o init.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic  -c lvs_rlm.c -o lvs_rlm.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o LVSmiRNA.so basic_fns.o init.o lvs_rlm.o -lgfortran -L/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/i386 -lRlapack -L/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/i386 -lRblas -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/LVSmiRNA.buildbin-libdir/LVSmiRNA/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Warning: replacing previous import 'boxplot' when loading 'graphics'
** help
*** installing help indices
** building package indices
** installing vignettes
   'LVSmiRNA.Rnw' 
** testing if installed package can be loaded
Warning: replacing previous import 'boxplot' when loading 'graphics'

* DONE (LVSmiRNA)


>>>>>>> 
>>>>>>> FIXING LINKS FOR LVSmiRNA.buildbin-libdir/LVSmiRNA/libs/i386/LVSmiRNA.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "LVSmiRNA.buildbin-libdir/LVSmiRNA/libs/i386/LVSmiRNA.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "LVSmiRNA.buildbin-libdir/LVSmiRNA/libs/i386/LVSmiRNA.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "LVSmiRNA.buildbin-libdir/LVSmiRNA/libs/i386/LVSmiRNA.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "LVSmiRNA.buildbin-libdir/LVSmiRNA/libs/i386/LVSmiRNA.so"


>>>>>>> 
>>>>>>> INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --preclean --no-multiarch --no-test-load --library=LVSmiRNA.buildbin-libdir --libs-only LVSmiRNA_1.7.0.tar.gz'
>>>>>>> 

* installing *source* package 'LVSmiRNA' ...
** libs
*** arch - ppc
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/ppc -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2  -c basic_fns.c -o basic_fns.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/ppc -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2  -c init.c -o init.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/ppc -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2  -c lvs_rlm.c -o lvs_rlm.o
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o LVSmiRNA.so basic_fns.o init.o lvs_rlm.o -lgfortran -lSystemStubs -L/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/ppc -lRlapack -L/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/ppc -lRblas -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/LVSmiRNA.buildbin-libdir/LVSmiRNA/libs/ppc

* DONE (LVSmiRNA)


>>>>>>> 
>>>>>>> FIXING LINKS FOR LVSmiRNA.buildbin-libdir/LVSmiRNA/libs/ppc/LVSmiRNA.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "LVSmiRNA.buildbin-libdir/LVSmiRNA/libs/ppc/LVSmiRNA.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "LVSmiRNA.buildbin-libdir/LVSmiRNA/libs/ppc/LVSmiRNA.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "LVSmiRNA.buildbin-libdir/LVSmiRNA/libs/ppc/LVSmiRNA.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "LVSmiRNA.buildbin-libdir/LVSmiRNA/libs/ppc/LVSmiRNA.so"


>>>>>>> 
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=LVSmiRNA.buildbin-libdir --libs-only LVSmiRNA_1.7.0.tar.gz'
>>>>>>> 

* installing *source* package 'LVSmiRNA' ...
** libs
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2  -c basic_fns.c -o basic_fns.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2  -c init.c -o init.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2  -c lvs_rlm.c -o lvs_rlm.o
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o LVSmiRNA.so basic_fns.o init.o lvs_rlm.o -lgfortran -L/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/x86_64 -lRlapack -L/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/x86_64 -lRblas -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/LVSmiRNA.buildbin-libdir/LVSmiRNA/libs/x86_64

* DONE (LVSmiRNA)


>>>>>>> 
>>>>>>> FIXING LINKS FOR LVSmiRNA.buildbin-libdir/LVSmiRNA/libs/x86_64/LVSmiRNA.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "LVSmiRNA.buildbin-libdir/LVSmiRNA/libs/x86_64/LVSmiRNA.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "LVSmiRNA.buildbin-libdir/LVSmiRNA/libs/x86_64/LVSmiRNA.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "LVSmiRNA.buildbin-libdir/LVSmiRNA/libs/x86_64/LVSmiRNA.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "LVSmiRNA.buildbin-libdir/LVSmiRNA/libs/x86_64/LVSmiRNA.so"