KEGGSOAP 1.31.1
Bioconductor Package Maintainer
| Snapshot Date: 2012-06-20 15:22:40 -0700 (Wed, 20 Jun 2012) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/KEGGSOAP | | Last Changed Rev: 65545 / Revision: 66885 | | Last Changed Date: 2012-04-27 16:41:39 -0700 (Fri, 27 Apr 2012) |
| lamb1 | Linux (openSUSE 12.1) / x86_64 | OK | WARNINGS | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | WARNINGS | OK |
| pitt | Mac OS X Leopard (10.5.8) / i386 | OK | [ WARNINGS ] | OK |
| perceval | Mac OS X Leopard (10.5.8) / i386 | OK | WARNINGS | OK |
* using log directory '/Users/biocbuild/bbs-2.11-bioc/meat/KEGGSOAP.Rcheck'
* using R version 2.15.0 Patched (2012-04-26 r59216)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'KEGGSOAP/DESCRIPTION' ... OK
* this is package 'KEGGSOAP' version '1.31.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'KEGGSOAP' can be installed ... WARNING
Found the following significant warnings:
Warning: Class "VirtualSOAPClass" is defined (with package slot 'SSOAP') but no metadata object found to revise subclass information---not exported? Making a copy in package '.GlobalEnv'
Warning: Class "VirtualXMLSchemaClass" is defined (with package slot 'XMLSchema') but no metadata object found to revise subclass information---not exported? Making a copy in package '.GlobalEnv'
See '/Users/biocbuild/bbs-2.11-bioc/meat/KEGGSOAP.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'KEGGSOAP/R/zzz.R':
.onLoad calls:
require("methods")
Package startup functions should not change the search path.
See section 'Good practice' in ?.onAttach.
list.pathways: warning in unlist(.SOAP(KEGGserver, "list_pathways",
.soapArgs = list(org = org), action = KEGGaction, xmlns = KEGGxmlns,
nameSpaces = SOAPNameSpaces(version = KEGGsoapns)), use.name =
FALSE): partial argument match of 'use.name' to 'use.names'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
WARNING: There was 1 warning.
NOTE: There was 1 note.
See
'/Users/biocbuild/bbs-2.11-bioc/meat/KEGGSOAP.Rcheck/00check.log'
for details.
* installing *source* package 'KEGGSOAP' ...
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Note: Method with signature "PrimitiveSOAPType#list" chosen for function "resolve",
target signature "PrimitiveSOAPType#SchemaCollection".
"SOAPType#SchemaCollection" would also be valid
Warning: Class "VirtualSOAPClass" is defined (with package slot 'SSOAP') but no metadata object found to revise subclass information---not exported? Making a copy in package '.GlobalEnv'
Warning: Class "VirtualXMLSchemaClass" is defined (with package slot 'XMLSchema') but no metadata object found to revise subclass information---not exported? Making a copy in package '.GlobalEnv'
Note: Method with signature "ArrayType#list" chosen for function "resolve",
target signature "ArrayType#SchemaCollection".
"SimpleSequenceType#SchemaCollection" would also be valid
* DONE (KEGGSOAP)