GeneRfold 1.15.0
Antoine Lucas
| Snapshot Date: 2012-03-30 18:21:29 -0700 (Fri, 30 Mar 2012) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GeneRfold | | Last Changed Rev: 64680 / Revision: 64689 | | Last Changed Date: 2012-03-30 15:15:56 -0700 (Fri, 30 Mar 2012) |
| lamb1 | Linux (openSUSE 12.1) / x86_64 | ERROR | skipped | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | N O T S U P P O R T E D |
| pitt | Mac OS X Leopard (10.5.8) / i386 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GeneRfold.buildbin-libdir GeneRfold_1.15.0.tar.gz'
>>>>>>>
* installing *source* package 'GeneRfold' ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking for main in -lRNA... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG -I/usr/local/include/ -fPIC -Wno-conversion -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c viennaR.c -o viennaR.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o GeneRfold.so viennaR.o -L/usr/local/lib/ -lRNA -fPIC -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/GeneRfold.buildbin-libdir/GeneRfold/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
'GeneRfold.Rnw'
** testing if installed package can be loaded
* DONE (GeneRfold)
>>>>>>>
>>>>>>> FIXING LINKS FOR GeneRfold.buildbin-libdir/GeneRfold/libs/i386/GeneRfold.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "GeneRfold.buildbin-libdir/GeneRfold/libs/i386/GeneRfold.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "GeneRfold.buildbin-libdir/GeneRfold/libs/i386/GeneRfold.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "GeneRfold.buildbin-libdir/GeneRfold/libs/i386/GeneRfold.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "GeneRfold.buildbin-libdir/GeneRfold/libs/i386/GeneRfold.so"
>>>>>>>
>>>>>>> INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --preclean --no-multiarch --no-test-load --library=GeneRfold.buildbin-libdir --libs-only GeneRfold_1.15.0.tar.gz'
>>>>>>>
* installing *source* package 'GeneRfold' ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking for main in -lRNA... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - ppc
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/ppc -DNDEBUG -I/usr/local/include/ -fPIC -Wno-conversion -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c viennaR.c -o viennaR.o
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o GeneRfold.so viennaR.o -L/usr/local/lib/ -lRNA -fPIC -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld warning: in /usr/local/lib/libRNA.a, file is not of required architecture
installing to /Users/biocbuild/bbs-2.11-bioc/meat/GeneRfold.buildbin-libdir/GeneRfold/libs/ppc
* DONE (GeneRfold)
>>>>>>>
>>>>>>> FIXING LINKS FOR GeneRfold.buildbin-libdir/GeneRfold/libs/ppc/GeneRfold.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "GeneRfold.buildbin-libdir/GeneRfold/libs/ppc/GeneRfold.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "GeneRfold.buildbin-libdir/GeneRfold/libs/ppc/GeneRfold.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "GeneRfold.buildbin-libdir/GeneRfold/libs/ppc/GeneRfold.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "GeneRfold.buildbin-libdir/GeneRfold/libs/ppc/GeneRfold.so"
>>>>>>>
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=GeneRfold.buildbin-libdir --libs-only GeneRfold_1.15.0.tar.gz'
>>>>>>>
* installing *source* package 'GeneRfold' ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking for main in -lRNA... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG -I/usr/local/include/ -fPIC -Wno-conversion -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c viennaR.c -o viennaR.o
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o GeneRfold.so viennaR.o -L/usr/local/lib/ -lRNA -fPIC -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld warning: in /usr/local/lib/libRNA.a, file is not of required architecture
installing to /Users/biocbuild/bbs-2.11-bioc/meat/GeneRfold.buildbin-libdir/GeneRfold/libs/x86_64
* DONE (GeneRfold)
>>>>>>>
>>>>>>> FIXING LINKS FOR GeneRfold.buildbin-libdir/GeneRfold/libs/x86_64/GeneRfold.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "GeneRfold.buildbin-libdir/GeneRfold/libs/x86_64/GeneRfold.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "GeneRfold.buildbin-libdir/GeneRfold/libs/x86_64/GeneRfold.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "GeneRfold.buildbin-libdir/GeneRfold/libs/x86_64/GeneRfold.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "GeneRfold.buildbin-libdir/GeneRfold/libs/x86_64/GeneRfold.so"