Back to the "Multiple platform build/check report" A  B  C [D] E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 165/609HostnameOS / ArchBUILDCHECKBUILD BIN
DiffBind 1.4.2
Rory Stark
Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/DiffBind
Last Changed Rev: 73533 / Revision: 74773
Last Changed Date: 2013-02-14 09:05:21 -0800 (Thu, 14 Feb 2013)
lamb1 Linux (openSUSE 12.1) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ OK ]
perceval Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: DiffBind
Version: 1.4.2
Command: rm -rf DiffBind.buildbin-libdir && mkdir DiffBind.buildbin-libdir && D:\biocbld\bbs-2.11-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DiffBind.buildbin-libdir DiffBind_1.4.2.tar.gz
StartedAt: 2013-03-25 03:53:21 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 03:54:51 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 90.5 seconds
RetCode: 0
Status:  OK  
PackageFile: DiffBind_1.4.2.zip
PackageFileSize: 2.449 MiB

Command output


install for i386

* installing *source* package 'DiffBind' ...
** libs
g++ -m32 -I"D:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c bamReader.cpp -o bamReader.o
g++ -m32 -I"D:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c bedReader.cpp -o bedReader.o
g++ -m32 -I"D:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c croi_func.cpp -o croi_func.o
g++ -m32 -I"D:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c croi_main.cpp -o croi_main.o
g++ -m32 -I"D:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c interval.cpp -o interval.o
g++ -m32 -I"D:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c intervalNode.cpp -o intervalNode.o
g++ -m32 -I"D:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c intervalSet.cpp -o intervalSet.o
g++ -m32 -I"D:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c intervalTree.cpp -o intervalTree.o
gcc -m32 -I"D:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c mergeOne.c -o mergeOne.o
mergeOne.c: In function 'mo_mergeTwo':
mergeOne.c:351:7: warning: variable 'keepAll' set but not used [-Wunused-but-set-variable]
g++ -m32 -I"D:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c reader.cpp -o reader.o
g++ -m32 -I"D:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c sequence.cpp -o sequence.o
g++ -m32 -I"D:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c util.cpp -o util.o
g++ -m32 -shared -s -static-libgcc -o DiffBind.dll tmp.def bamReader.o bedReader.o croi_func.o croi_main.o interval.o intervalNode.o intervalSet.o intervalTree.o mergeOne.o reader.o sequence.o util.o D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/usrlib/i386/libbam.a D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/usrlib/i386/libbam.a D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/usrlib/i386/libbcf.a D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/usrlib/i386/libtabix.a -lws2_32 -LD:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/libs/i386 -lzlib1bioc -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-2˜1.11-/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.11-bioc/meat/DiffBind.buildbin-libdir/DiffBind/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'DiffBind.Rnw' 
** testing if installed package can be loaded

install for x64

* installing *source* package 'DiffBind' ...
** libs
g++ -m64 -I"D:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c bamReader.cpp -o bamReader.o
g++ -m64 -I"D:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c bedReader.cpp -o bedReader.o
g++ -m64 -I"D:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c croi_func.cpp -o croi_func.o
g++ -m64 -I"D:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c croi_main.cpp -o croi_main.o
g++ -m64 -I"D:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c interval.cpp -o interval.o
g++ -m64 -I"D:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c intervalNode.cpp -o intervalNode.o
g++ -m64 -I"D:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c intervalSet.cpp -o intervalSet.o
g++ -m64 -I"D:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c intervalTree.cpp -o intervalTree.o
gcc -m64 -I"D:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c mergeOne.c -o mergeOne.o
mergeOne.c: In function 'mo_mergeTwo':
mergeOne.c:351:7: warning: variable 'keepAll' set but not used [-Wunused-but-set-variable]
g++ -m64 -I"D:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c reader.cpp -o reader.o
g++ -m64 -I"D:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c sequence.cpp -o sequence.o
g++ -m64 -I"D:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c util.cpp -o util.o
g++ -m64 -shared -s -static-libgcc -o DiffBind.dll tmp.def bamReader.o bedReader.o croi_func.o croi_main.o interval.o intervalNode.o intervalSet.o intervalTree.o mergeOne.o reader.o sequence.o util.o D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/usrlib/x64/libbam.a D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/usrlib/x64/libbam.a D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/usrlib/x64/libbcf.a D:/biocbld/bbs-2.11-bioc/R/library/Rsamtools/usrlib/x64/libtabix.a -lws2_32 -LD:/biocbld/bbs-2.11-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-2˜1.11-/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.11-bioc/meat/DiffBind.buildbin-libdir/DiffBind/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DiffBind' as DiffBind_1.4.2.zip

* DONE (DiffBind)