Package: DTA

Version: 2.4.0

Command: /home/biocbuild/bbs-2.11-bioc/R/bin/R CMD check --no-vignettes --timings DTA_2.4.0.tar.gz

StartedAt: 2013-03-25 00:46:15 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 00:53:46 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 450.5 seconds

RetCode: 0

Status:  OK

CheckDir: DTA.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.11-bioc/meat/DTA.Rcheck’
* using R version 2.15.3 (2013-03-01)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘DTA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DTA’ version ‘2.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘DTA’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 11.2Mb
  sub-directories of 1Mb or more:
    data   6.8Mb
    doc    4.1Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                        user system elapsed
DTA.dynamic.generate 156.041 15.881 175.102
DTA.estimate          90.974  6.768  99.332
DTA.generate          76.841  2.944  81.087
DTA.dynamic.estimate  47.699  0.080  48.684
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/loc/home/biocbuild/bbs-2.11-bioc/meat/DTA.Rcheck/00check.log’
for details.

* installing *source* package ‘DTA’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘DTA.Rnw’ 
** testing if installed package can be loaded

* DONE (DTA)

name	user	system	elapsed
DTA-package	0	0	0
DTA.dynamic.estimate	47.699	0.080	48.684
DTA.dynamic.generate	156.041	15.881	175.102
DTA.estimate	90.974	6.768	99.332
DTA.generate	76.841	2.944	81.087
DTA.map.it	0	0	0
DTA.normalize	0	0	0
DTA.phenomat	0.000	0.000	0.001
DTA.plot.it	0.048	0.004	0.060
tls	2.528	0.616	3.141