Package: ggtut

Version: 0.0.42

Command: /home/biocbuild/bbs-2.10-bioc/R/bin/R CMD check --no-vignettes --timings ggtut_0.0.42.tar.gz

StartedAt: 2012-09-23 13:02:05 -0700 (Sun, 23 Sep 2012)

EndedAt: 2012-09-23 13:09:38 -0700 (Sun, 23 Sep 2012)

EllapsedTime: 452.9 seconds

RetCode: 0

Status:  OK

CheckDir: ggtut.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.10-data-experiment/meat/ggtut.Rcheck’
* using R version 2.15.1 (2012-06-22)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ggtut/DESCRIPTION’ ... OK
* this is package ‘ggtut’ version ‘0.0.42’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘ggtut’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 228.7Mb
  sub-directories of 1Mb or more:
    bam          15.1Mb
    data         22.3Mb
    doc           8.2Mb
    ffarchives  129.9Mb
    ffobjects     1.6Mb
    images       12.9Mb
    sqlite       38.0Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
getFixedBFL: warning in dir(system.file("bam", package = "ggtut"), patt
  = "bam$", full = TRUE): partial argument match of 'patt' to 'pattern'
getFixedBFL: warning in dir(system.file("bam", package = "ggtut"), patt
  = "bam$", full = TRUE): partial argument match of 'full' to
  'full.names'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  ‘/loc/home/biocbuild/bbs-2.10-data-experiment/meat/ggtut.Rcheck/00check.log’
for details.

* installing *source* package ‘ggtut’ ...
** R
** data
** inst
** preparing package for lazy loading
Warning: replacing previous import ‘space’ when loading ‘IRanges’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import ‘space’ when loading ‘IRanges’

* DONE (ggtut)

name	user	system	elapsed
c17imp	1.964	0.048	2.011
g17rngsnr	0.076	0.004	0.081
ggtut-package	0.924	0.028	0.949
observed17ceu	0.256	0.012	0.270
rules.n43	10.549	0.120	10.675
snpgr17	1.524	0.020	1.547