xcms 1.10.7
Colin A. Smith
| Snapshot Date: 2008-04-02 12:12:36 -0700 (Wed, 02 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/xcms | | Last Changed Rev: 30797 / Revision: 30807 | | Last Changed Date: 2008-04-02 03:38:24 -0700 (Wed, 02 Apr 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | OK | [ OK ] |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
installing R.css in D:/biocbld/bbs-2.1-bioc/meat/xcms.buildbin-libdir
Using auto-selected zip options ' xcms-HELP=ziponly'
---------- Making package xcms ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making base64.d from base64.c
making mzboxes.d from mzboxes.c
making netCDF.d from netCDF.c
making ramp.d from ramp.c
making rampR.d from rampR.c
making util.d from util.c
making xcms.d from xcms.c
gcc-sjlj -std=gnu99 -I./win -D_MSC_VER -ID:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c base64.c -o base64.o
base64.c:18: warning: 'encode_group' defined but not used
base64.c:46: warning: 'decode_group' defined but not used
gcc-sjlj -std=gnu99 -I./win -D_MSC_VER -ID:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c mzboxes.c -o mzboxes.o
gcc-sjlj -std=gnu99 -I./win -D_MSC_VER -ID:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c netCDF.c -o netCDF.o
gcc-sjlj -std=gnu99 -I./win -D_MSC_VER -ID:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c ramp.c -o ramp.o
ramp.c: In function 'readPeaks':
ramp.c:1535: warning: 'multiplier' may be used uninitialized in this function
ramp.c:1534: warning: 'deltaMass' may be used uninitialized in this function
ramp.c:1533: warning: 'lastMass' may be used uninitialized in this function
gcc-sjlj -std=gnu99 -I./win -D_MSC_VER -ID:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c rampR.c -o rampR.o
gcc-sjlj -std=gnu99 -I./win -D_MSC_VER -ID:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c util.c -o util.o
gcc-sjlj -std=gnu99 -I./win -D_MSC_VER -ID:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c xcms.c -o xcms.o
xcms.c: In function 'ProfBinLin':
xcms.c:11: warning: 'ypre' may be used uninitialized in this function
xcms.c:11: warning: 'xpre' may be used uninitialized in this function
xcms.c: In function 'ProfBinLinBase':
xcms.c:62: warning: 'ipre' may be used uninitialized in this function
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I D:/biocbld/bbs-2.1-bioc/R/include -i xcms_res.rc -o xcms_res.o
gcc-sjlj -std=gnu99 -shared -s -o xcms.dll xcms.def base64.o mzboxes.o netCDF.o ramp.o rampR.o util.o xcms.o xcms_res.o -LD:/biocbld/bbs-2.1-bioc/R/bin -L./win -lws2_32 -lnetcdf -lz -lR
... DLL made
installing DLL
installing R files
installing inst files
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'xcms'
Formats: text html latex example chm
SSgauss text html latex chm
c.xcmsSet text html latex chm
colMax text html latex chm
descendZero text html latex example chm
diffreport-methods text html latex chm
doubleMatrix text html latex chm
etg text html latex chm
fillPeaks-methods text html latex chm
filtfft text html latex chm
findEqualGreater text html latex chm
findMZBoxes-methods text html latex chm
findPeaks-methods text html latex chm
findPeaks.MSW-methods text html latex chm
findPeaks.centWave-methods text html latex chm
findPeaks.matchedFilter-methods text html latex chm
getEIC-methods text html latex chm
getPeaks-methods text html latex chm
getScan-methods text html latex chm
getSpec-methods text html latex chm
group-methods text html latex chm
groupnames-methods text html latex chm
groupval-methods text html latex chm
image.xcmsRaw text html latex chm
medianFilter text html latex example chm
na.flatfill text html latex chm
netCDF text html latex chm
panel.cor text html latex chm
plot.xcmsEIC text html latex chm
plotChrom-methods text html latex chm
plotPeaks-methods text html latex chm
plotRaw-methods text html latex chm
plotScan-methods text html latex chm
plotSpec-methods text html latex chm
plotSurf-methods text html latex chm
plotTIC-methods text html latex chm
plotrt-methods text html latex chm
profGenerate text html latex chm
profMedFilt-methods text html latex chm
profMethod-methods text html latex chm
profRange-methods text html latex chm
profStep-methods text html latex chm
pval text html latex chm
ramp text html latex chm
rawEIC-methods text html latex chm
rectUnique text html latex example chm
retcor-methods text html latex chm
retexp text html latex chm
sampnames-methods text html latex chm
specNoise text html latex chm
specPeaks text html latex chm
split.xcmsSet text html latex chm
xcmsEIC-class text html latex chm
xcmsRaw-class text html latex chm
xcmsRaw text html latex chm
xcmsSet-class text html latex chm
xcmsSet text html latex chm
zipping help files
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "fx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.1-bioc\meat\R.INSTALL.5912\xcms\chm\xcms.chm
HHC4016: Warning: Cannot open "fx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
The following files were not compiled:
preparing package xcms for lazy loading
adding MD5 sums
packaged installation of package 'xcms' as xcms_1.10.7.zip
* DONE (xcms)