Package: limmaGUI

Version: 1.14.1

Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD check limmaGUI_1.14.1.tar.gz

StartedAt: 2008-04-02 15:59:59 -0700 (Wed, 02 Apr 2008)

EndedAt: 2008-04-02 16:00:34 -0700 (Wed, 02 Apr 2008)

EllapsedTime: 34.5 seconds

RetCode: 0

Status: OK

CheckDir: limmaGUI.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/home/biocbuild/bbs-2.1-bioc/meat/limmaGUI.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'limmaGUI/DESCRIPTION' ... OK
* this is package 'limmaGUI' version '1.14.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'limmaGUI' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Error in e[[4]] : subscript out of bounds
Calls: <Anonymous> ... collectUsageArgs -> walkCode -> h -> walkCode -> typeof
Execution halted
Error in e[[4]] : subscript out of bounds
Calls: <Anonymous> ... collectUsageArgs -> walkCode -> h -> walkCode -> typeof
Execution halted
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating limmaGUI-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating limmaGUI-manual.tex ... OK
* checking limmaGUI-manual.tex ... OK

* Installing *source* package 'limmaGUI' ...
** R
** inst
** preparing package for lazy loading
Loading required package: limma
Loading required package: tcltk
Loading Tcl/Tk interface ... done
** help
Note: unmatched right brace in 'limmaGUI' on or after line 139
 >>> Building/Updating help pages for package 'limmaGUI'
     Formats: text html latex example 
  LGchangelog                       text    html    latex
  limmaGUI                          text    html    latex
** building package indices ...
* DONE (limmaGUI)