hexbin 1.12.0
Nicholas Lewin-Koh
| Snapshot Date: 2008-04-02 12:12:36 -0700 (Wed, 02 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/hexbin | | Last Changed Rev: 27709 / Revision: 30807 | | Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/hexbin.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'hexbin/DESCRIPTION' ... OK
* this is package 'hexbin' version '1.12.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'hexbin' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
all.intersect: no visible binding for global variable 'binlst'
grid.hexagons: no visible binding for global variable 'bin'
hexplom.formula: no visible global function definition for 'updateList'
inout.hex: no visible global function definition for 'exit'
mixcolors: no visible global function definition for 'coords'
panel.hexpose: no visible binding for global variable 'h'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating hexbin-Ex.R ... OK
* checking examples ... OK
* checking tests ...
make[1]: Entering directory `/cygdrive/d/biocbld/bbs-2.1-bioc/meat/hexbin.Rcheck/tests'
Running 'hdiffplot.R'
Comparing 'hdiffplot.Rout' to 'hdiffplot.Rout.save' ...3a4,11
>
> Attaching package: 'colorspace'
>
>
> The following object(s) are masked from package:grDevices :
>
> hcl
>
8,9c16
< In RNGkind("Marsaglia-Multicarry", "Buggy Kinderman-Ramage") :
< Buggy version of Kinderman-Ramage generator used.
---
> Buggy version of Kinderman-Ramage generator used. in: RNGkind("Marsaglia-Multicarry", "Buggy Kinderman-Ramage")
59c66
< ..@ eroded: logi [1:535] FALSE FALSE FALSE FALSE FALSE FALSE ...
---
> ..@ eroded: logi [1:535] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE ...
104c111
< ..@ eroded: logi [1:906] FALSE FALSE FALSE FALSE FALSE FALSE ...
---
> ..@ eroded: logi [1:906] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE ...
135d141
< + plot.new()
138,146d143
< [1] 0
< [1] 0.5
< [1] "1:2"
< [1] 0
< [1] 0.5
< [1] "1:2"
< [1] 0
< [1] 0.5
< [1] "1:2"
OK
Running 'hray.R'
Running 'large.R'
Running 'viewp-ex.R'
make[1]: Leaving directory `/cygdrive/d/biocbld/bbs-2.1-bioc/meat/hexbin.Rcheck/tests'
OK
* checking package vignettes in 'inst/doc' ... OK
* creating hexbin-manual.tex ... OK
* checking hexbin-manual.tex ... OK
installing R.css in D:/biocbld/bbs-2.1-bioc/meat/hexbin.Rcheck
---------- Making package hexbin ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
gfortran-sjlj -O3 -c hbin.f -o hbin.o
gfortran-sjlj -O3 -c hcell.f -o hcell.o
gfortran-sjlj -O3 -c herode.f -o herode.o
gfortran-sjlj -O3 -c hsm.f -o hsm.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I d:/biocbld/bbs-2.1-bioc/R/include -i hexbin_res.rc -o hexbin_res.o
gcc-sjlj -std=gnu99 -shared -s -o hexbin.dll hexbin.def hbin.o hcell.o herode.o hsm.o hexbin_res.o -Ld:/biocbld/bbs-2.1-bioc/R/bin -lgfortran -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'hexbin'
Formats: text html latex example chm
NHANES text html latex example chm
colramp text html latex example chm
erode.hexbin text html latex example chm
getHMedian text html latex example chm
gplot.hexbin text html latex example chm
grid.hexagons text html latex example chm
grid.hexlegend text html latex example chm
hboxplot text html latex example chm
hcell2xy text html latex example chm
hcell2xyInt text html latex example chm
hdiffplot text html latex example chm
hexGraphPaper text html latex example chm
hexList text html latex example chm
hexMA.loess text html latex example chm
hexTapply text html latex example chm
hexVP-class text html latex example chm
hexVP.abline text html latex example chm
hexViewport text html latex example chm
hexbin text html latex example chm
hexbinplot text html latex example chm
hexplom text html latex example chm
hexpolygon text html latex example chm
hsmooth-methods text html latex chm
inout.hex text html latex chm
list2hexList text html latex chm
old-classes text html latex chm
optShape text html latex example chm
panel.hexboxplot text html latex example chm
panel.hexgrid text html latex example chm
panel.hexloess text html latex example chm
plotMAhex text html latex example chm
pushHexport text html latex chm
smooth.hexbin text html latex example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.1-bioc\meat\hexbin.Rcheck\00_pkg_src\hexbin\chm\hexbin.chm
HHC4016: Warning: Cannot open "NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
The following files were not compiled:
preparing package hexbin for lazy loading
Loading required package: grid
Loading required package: lattice
Creating a new generic function for "plot" in "hexbin"
Creating a new generic function for "summary" in "hexbin"
adding MD5 sums
* DONE (hexbin)