genefilter 1.16.0
Biocore Team c/o BioC user list
| Snapshot Date: 2008-04-02 12:12:36 -0700 (Wed, 02 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/genefilter | | Last Changed Rev: 27709 / Revision: 30807 | | Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | [ OK ] |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
installing R.css in E:/biocbld/bbs-2.1-bioc/meat/genefilter.buildbin-libdir
Using auto-selected zip options 'genefilter-ZIPDATA=zip genefilter-HELP=ziponly'
---------- Making package genefilter ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making init.d from init.c
making nd.d from nd.c
making pAUC.d from pAUC.c
making rowPAUCs.d from rowPAUCs.c
making rowttests.d from rowttests.c
making half_range_mode.d from half_range_mode.cpp
gcc-sjlj -std=gnu99 -IE:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c init.c -o init.o
gcc-sjlj -std=gnu99 -IE:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c nd.c -o nd.o
nd.c: In function 'gf_dist_binary':
nd.c:242: warning: unused variable 'w2'
nd.c:242: warning: unused variable 'w1'
gcc-sjlj -std=gnu99 -IE:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c pAUC.c -o pAUC.o
pAUC.c: In function 'pAUC_c':
pAUC.c:75: warning: operation on 'ta' may be undefined
pAUC.c:78: warning: operation on 'ta' may be undefined
pAUC.c:81: warning: operation on 'ta' may be undefined
pAUC.c: In function 'pAUC':
pAUC.c:141: warning: suggest parentheses around comparison in operand of |
pAUC.c:123: warning: unused variable 'i'
pAUC.c: In function 'pAUC_c':
pAUC.c:22: warning: 'ysum' may be used uninitialized in this function
pAUC.c:22: warning: 'xsum' may be used uninitialized in this function
gcc-sjlj -std=gnu99 -IE:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c rowPAUCs.c -o rowPAUCs.o
rowPAUCs.c: In function 'ROCpAUC_c':
rowPAUCs.c:96: warning: operation on 'ta' may be undefined
rowPAUCs.c:99: warning: operation on 'ta' may be undefined
rowPAUCs.c:102: warning: operation on 'ta' may be undefined
gcc-sjlj -std=gnu99 -IE:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c rowttests.c -o rowttests.o
gfortran-sjlj -O3 -c ttest.f -o ttest.o
g++-sjlj -IE:/biocbld/bbs-2.1-bioc/R/include -O2 -Wall -c half_range_mode.cpp -o half_range_mode.o
half_range_mode.cpp: In function 'double half_range_mode(double*, double*, double, int)':
half_range_mode.cpp:101: warning: deprecated conversion from string constant to 'char*'
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I E:/biocbld/bbs-2.1-bioc/R/include -i genefilter_res.rc -o genefilter_res.o
g++-sjlj -shared -s -o genefilter.dll genefilter.def init.o nd.o pAUC.o rowPAUCs.o rowttests.o ttest.o half_range_mode.o genefilter_res.o -LE:/biocbld/bbs-2.1-bioc/R/bin -lgfortran -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
preparing package genefilter for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: survival
Loading required package: splines
Creating a new generic function for "plot" in "genefilter"
preparing package genefilter for lazy data loading
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'genefilter'
Formats: text html latex example chm
Anova text html latex example chm
allNA text html latex example chm
coxfilter text html latex example chm
cv text html latex example chm
dist2 text html latex example chm
eSetFilter text html latex example chm
filterfun text html latex example chm
findLargest text html latex example chm
gapFilter text html latex example chm
genefilter text html latex example chm
genefinder text html latex example chm
genescale text html latex example chm
half.range.mode text html latex example chm
kOverA text html latex example chm
maxA text html latex example chm
nsFilter text html latex example chm
pOverA text html latex example chm
rowFtests text html latex example chm
rowROC-class text html latex example chm
rowSds text html latex example chm
rowpAUCs text html latex example chm
shorth text html latex example chm
tdata text html latex example chm
ttest text html latex example chm
zipping help files
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.1-bioc\meat\R.INSTALL.2852\genefilter\chm\genefilter.chm
Compile time: 0 minutes, 0 seconds
25 Topics
124 Local links
2 Internet links
1 Graphic
Created e:\biocbld\bbs-2.1-bioc\meat\R.INSTALL.2852\genefilter\chm\genefilter.chm, 56,143 bytes
Compression decreased file by 52,288 bytes.
adding MD5 sums
packaged installation of package 'genefilter' as genefilter_1.16.0.zip
* DONE (genefilter)