SMAP 1.2.0
Robin Andersson
| Snapshot Date: 2008-04-02 12:12:36 -0700 (Wed, 02 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/SMAP | | Last Changed Rev: 27709 / Revision: 30807 | | Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | [ OK ] | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for file 'SMAP/DESCRIPTION' ... OK
* preparing 'SMAP':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.1-bioc/tmpdir/Rinst244837216
---------- Making package SMAP ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making gradient.d from gradient.c
making init.d from init.c
making overlap.d from overlap.c
making prob.d from prob.c
making viterbi.d from viterbi.c
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c gradient.c -o gradient.o
gradient.c: In function 'hmm_update':
gradient.c:247: warning: unused variable 'tmp'
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c init.c -o init.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c overlap.c -o overlap.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c prob.c -o prob.o
gcc-sjlj -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c viterbi.c -o viterbi.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I d:/biocbld/bbs-2.1-bioc/R/include -i SMAP_res.rc -o SMAP_res.o
gcc-sjlj -std=gnu99 -shared -s -o SMAP.dll SMAP.def gradient.o init.o overlap.o prob.o viterbi.o SMAP_res.o -Ld:/biocbld/bbs-2.1-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
preparing package SMAP for lazy loading
Creating a new generic function for "plot" in "SMAP"
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'SMAP'
Formats: text html latex example chm
GBM text html latex example chm
SMAP-internal text html latex chm
SMAPHMM-class text html latex chm
SMAPHMM text html latex chm
SMAPObservations-class text html latex chm
SMAPObservations text html latex example chm
SMAPProfile-class text html latex chm
SMAPProfiles-class text html latex chm
smap text html latex example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "n;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.1-bioc\meat\SMAP\chm\SMAP.chm
HHC4016: Warning: Cannot open "n;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
The following files were not compiled:
adding MD5 sums
* DONE (SMAP)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'SMAP_1.2.0.tar.gz'